Gene omics information

Query gene ID	1619954_at
Gene name	hypothetical protein LOC100257028
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.54	75.7	1619954_at	CB974333	hypothetical protein LOC100257028	-	7e-16	At5g07830	AtGUS2 (Arabidopsis thaliana glucuronidase 2)	S.X.	H.G.	Please select
0.73	90.8	1609143_at	CF209852	hypothetical protein LOC100254311	-	2e+1	At5g66240	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.67	87.9	1616512_at	CF405777	hypothetical LOC100244665	-	2e-8	At5g12350	Ran GTPase binding / chromatin binding / zinc ion binding	S.X.	H.G.	Please select
0.67	87.9	1612852_at	CB976927	hypothetical protein LOC100243284	-	5e-76	At5g62890	permease, putative	S.X.	H.G.	Please select
0.64	84.7	1608070_at	CF214791	hypothetical protein LOC100245501	-	1e+0	At4g10880	unknown protein	S.X.	H.G.	Please select
0.55	77.3	1609772_at	CF511919	hypothetical protein LOC100246247	-	3e-1	At3g56880	VQ motif-containing protein	S.X.	H.G.	Please select
0.46	66.5	1614917_at	CF372079	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	S.X.	H.G.	Please select
0.46	66.5	1613050_at	CB971087	hypothetical protein LOC100248215	-	5e-4	At1g20470	auxin-responsive family protein	S.X.	H.G.	Please select
0.43	61.5	1607831_at	BQ799075	hypothetical protein LOC100249242	-	8e-7	At3g03950	protein binding	S.X.	H.G.	Please select
0.41	58.7	1615115_at	CD801173	hypothetical protein LOC100244778	-	1e-38	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	97.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	1619504_at	CF516503	hypothetical protein LOC100260370	-	2e+0	At3g03870	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	1617951_at	CF210455	hypothetical protein LOC100264674	-	3e-4	At5g40230	nodulin-related	C.G.	S.X.	Please select
0.02	2e-1	36	1613910_at	CB342251	-	-	4e+0	At5g28720	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	1621495_at	CF515274	hypothetical protein LOC100259742	-	2e-7	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.02	7e-1	34	1614817_at	CB970028	hypothetical protein LOC100267905	-	2e-12	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1622764_at	BQ800166	hypothetical protein LOC100263235	-	1e-49	At2g44610	RAB6A	C.G.	S.X.	Please select
0.00	3e+0	32	1620265_at	BQ793093	-	-	0	Atcg00480	-	C.G.	S.X.	Please select
0.00	3e+0	32	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	C.G.	S.X.	Please select
0.01	1e+1	30	1622794_at	CF211821	hypothetical protein LOC100254649	-	3e-6	At2g37200	integral membrane protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	7e-16	85	Arabidopsis thaliana	At5g07830	830676	AtGUS2 (Arabidopsis thaliana glucuronidase 2)	Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be membrane-associated.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	5e-39	163	Glycine max	Gma.17095.2.S1_at	BU763986	-	-	3e+0	At5g61250	AtGUS1 (Arabidopsis thaliana glucuronidase 1)	C.G.	S.X.	Please select
0.07	3e-4	46	Hordeum vulgare	Contig13120_at	Contig13120	-	-	3e-5	At5g07830	AtGUS2 (Arabidopsis thaliana glucuronidase 2)	C.G.	S.X.	Please select
0.09	8e-8	59	Oryza sativa	Os12g0578400	AK060767.1	-	Glycoside hydrolase, family 79, N-terminal domaincontaining protein	3e-4	At5g61250	AtGUS1 (Arabidopsis thaliana glucuronidase 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.47	1e-79	297	Populus trichocarpa	PtpAffx.6053.1.S1_s_at	CN520953	hypothetical protein	-	9e-21	At5g07830	AtGUS2 (Arabidopsis thaliana glucuronidase 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	6e-1	36	Triticum aestivum	Ta.4061.1.S1_at	BJ283947	-	-	1e-2	At5g07830	AtGUS2 (Arabidopsis thaliana glucuronidase 2)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.9778.1.A1_at	BM338606	outer envelope protein	-	3e-3	At2g43950	OEP37	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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