Gene omics information

Query gene ID	1619882_at
Gene name	hypothetical protein LOC100265088
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	73.9	1619882_at	CF604338	hypothetical protein LOC100265088	-	9e-17	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	S.X.	H.G.	Please select
0.48	68.8	1619940_at	CF518701	hypothetical protein LOC100241361 /// hypothetical protein LOC100261422	-	3e-2	At2g32980	unknown protein	S.X.	H.G.	Please select
0.40	57.7	1609738_at	CF518474	similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding	-	1e+0	At4g17565	F-box family protein	S.X.	H.G.	Please select
0.39	54.9	1611589_at	CF603716	hypothetical protein LOC100241492	-	2e-61	At3g06670	binding	S.X.	H.G.	Please select
0.38	53.6	1611434_at	CF603154	hypothetical protein LOC100247199	-	5e-16	At4g24220	VEP1 (VEIN PATTERNING 1)	S.X.	H.G.	Please select
0.38	53.6	1614355_at	CF604126	-	-	7e-8	At1g12050	fumarylacetoacetase, putative	S.X.	H.G.	Please select
0.32	43.1	1618104_at	CA808387	hypothetical protein LOC100267860	-	1e+0	At3g43880	unknown protein	S.X.	H.G.	Please select
0.28	37.7	1616274_at	CB971992	hypothetical protein LOC100258912	-	7e-46	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	S.X.	H.G.	Please select
0.27	34.0	1608757_at	CB349275	hypothetical protein LOC100266172	-	3e-17	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	S.X.	H.G.	Please select
0.20	22.4	1615848_at	CF214849	hypothetical protein LOC100250419	-	2e-3	At2g21500	protein binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0	98.7	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8	96.4	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8	96.4	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-3	42	1607710_at	CF213883	hypothetical protein LOC100257507	-	2e-3	At1g31940	unknown protein	C.G.	S.X.	Please select
0.05	5e-3	40	1620262_at	CB349791	-	-	3e+0	At4g14272	-	C.G.	S.X.	Please select
0.03	8e-2	36	1618162_at	CF210992	hypothetical LOC100263352	-	2e-1	At2g36700	pectinesterase family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1620085_at	CF516195	hypothetical protein LOC100266649	-	1e+0	At1g23240	caleosin-related family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1619101_at	CB975563	hypothetical protein LOC100248761	-	4e-13	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.03	3e-1	34	1618984_at	CF206626.1	hypothetical protein LOC100266739	-	9e-8	At1g77350	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	1617924_at	CF516663	hypothetical protein LOC100244208	-	5e-17	At3g63310	glutamate binding	C.G.	S.X.	Please select
0.03	3e-1	34	1616703_at	BQ800335	hypothetical protein LOC100255569	-	2e-2	At1g28480	GRX480	C.G.	S.X.	Please select
0.02	3e-1	34	1612355_at	CD010675	-	-	2e-15	At3g05090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	9e-17	87	Arabidopsis thaliana	At5g08080	830702	SYP132 (SYNTAXIN OF PLANTS 132)	member of SYP13 Gene Family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	2e-31	137	Glycine max	GmaAffx.40774.1.S1_at	BG363156	-	-	1e-24	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.12	1e-17	89	Hordeum vulgare	Contig6952_at	Contig6952	-	-	4e-5	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.09	4e-8	59	Oryza sativa	Os07g0164300	AK099351.1	-	Syntaxin, N-terminal domain containing protein	1e-11	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-73	276	Populus trichocarpa	PtpAffx.58146.1.S1_at	CV261342	hypothetical protein	-	6e-63	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-17	89	Triticum aestivum	Ta.3207.2.S1_a_at	CD889824	-	-	4e-5	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.3892.18.S1_a_at	AI746067	Elongation factor 1 alpha	-	2e-6	At1g35550	elongation factor Tu C-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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