Gene omics information

Query gene ID	1619874_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	93.9	1619874_at	CB004955	-	-	7e-3	At2g16580	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.52	73.9	1612296_at	CD802074	hypothetical protein LOC100241683	-	4e-12	At3g55920	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	S.X.	H.G.	Please select
0.43	61.5	1615282_s_at	CB345099	hypothetical protein LOC100261311	-	2e-21	At3g16570	RALFL23 (ralf-like 23)	S.X.	H.G.	Please select
0.31	41.3	1616932_at	BQ797202	hypothetical protein LOC100254373	-	1e-8	At1g71110	unknown protein	S.X.	H.G.	Please select
0.27	34.0	1615628_at	CB345697	hypothetical protein LOC100244782	-	5e-1	At4g10080	unknown protein	S.X.	H.G.	Please select
0.25	30.5	1615610_at	CF215193	-	-	1e-1	At5g57270	unknown protein	S.X.	H.G.	Please select
0.25	30.5	1620218_at	CF405310	hypothetical protein LOC100262456	-	1e+0	At1g64490	unknown protein	S.X.	H.G.	Please select
0.23	27.5	1619593_at	CF215832	hypothetical protein LOC100255022	-	2e-11	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	S.X.	H.G.	Please select
0.23	27.5	1606675_at	CB006583	hypothetical protein LOC100241072	-	1e-97	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	S.X.	H.G.	Please select
0.18	19.4	1615100_at	CD800731	-	-	6e-9	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.1	99.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.2	99.1	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.5	98.9	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.4	98.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.4	98.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
5.7	98.5	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.6	98.4	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.6	98.4	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.5	98.4	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	839	1616104_at	CB004955	hypothetical protein LOC100252339	-	7e-3	At2g16580	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.22	9e-15	79	1613054_at	BQ794856	hypothetical protein LOC100257133	-	1e-25	At4g34760	auxin-responsive family protein	C.G.	S.X.	Please select
0.01	5e-1	34	1619912_at	CB981956	hypothetical protein LOC100248672 /// hypothetical protein LOC100258262	-	6e-91	At1g29310	P-P-bond-hydrolysis-driven protein transmembrane transporter	C.G.	S.X.	Please select
0.01	5e-1	34	1615323_a_at	CB981956	hypothetical protein LOC100250458 /// hypothetical protein LOC100248672 /// hypothetical protein LOC100258262	-	6e-91	At1g29310	P-P-bond-hydrolysis-driven protein transmembrane transporter	C.G.	S.X.	Please select
0.02	2e+0	32	1621385_at	CF206496.1	-	-	2e+0	At4g04630	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1621378_at	BQ794342	hypothetical protein LOC100260851	-	2e-84	At2g35390	ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)	C.G.	S.X.	Please select
0.02	2e+0	32	1619371_at	CA809340	beta-carotene hydroxylase	-	8e-20	At4g25700	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1618146_at	CF518965	hypothetical protein LOC100252301	-	4e+0	At2g17972	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1615002_at	CD713297	-	-	5e+0	At5g25190	ethylene-responsive element-binding protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	7e-3	42	Arabidopsis thaliana	At2g16580	816158	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	9e-3	42	Glycine max	GmaAffx.75503.1.S1_at	BE822093	-	-	1e-16	At1g75580	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	Contig26597_at	Contig26597	-	-	9e-2	At5g47330	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	OsAffx.30725.3.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	9e-40	165	Populus trichocarpa	PtpAffx.46365.2.S1_at	CK097760	SAUR family protein	-	2e-5	At4g34760	auxin-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.58379.1.S1_at	CA620086	-	-	1e+0	At5g04267	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.210.1.A1_at	AI670218	-	-	8e-1	At5g52200	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage