Gene omics information

Query gene ID	1619845_at
Gene name	hypothetical protein LOC100252548
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	75.2	1619845_at	CB918038	hypothetical protein LOC100252548	-	4e-19	At4g33530	KUP5	S.X.	H.G.	Please select
0.67	87.9	1618226_at	CF210927	hypothetical protein LOC100259643	-	7e-77	At3g11540	SPY (SPINDLY)	S.X.	H.G.	Please select
0.60	81.9	1610573_at	CF210407	hypothetical protein LOC100247694	-	1e-124	At5g18580	FASS (FASS 1)	S.X.	H.G.	Please select
0.50	72.7	1607280_at	CF513816	hypothetical protein LOC100259978	-	8e-57	At3g13772	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.44	64.1	1608903_at	CF516993	hypothetical protein LOC100245579	-	9e-10	At3g14100	oligouridylate-binding protein, putative	S.X.	H.G.	Please select
0.40	57.7	1615460_at	CF405945	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	95.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	1622043_at	CF211984	-	-	1e+0	At1g10100	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1621606_at	CD005498	hypothetical protein LOC100256585	-	2e-2	At4g37090	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1616848_at	CF511470	hypothetical protein LOC100250406	-	1e+0	At1g24575	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616540_at	CF414501	hypothetical protein LOC100244175	-	3e-14	At1g71865	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1609772_at	CF511919	hypothetical protein LOC100246247	-	3e-1	At3g56880	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1608999_at	CD005003	-	-	2e-2	At4g37090	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	30	1622867_s_at	CB342248	hypothetical protein LOC100264026	-	7e-72	At5g13650	elongation factor family protein	C.G.	S.X.	Please select
0.02	7e+0	30	1622396_at	CF202537.1	hypothetical protein LOC100256781 /// hypothetical protein LOC100255087	-	4e-1	At1g76680	OPR1	C.G.	S.X.	Please select
0.02	7e+0	30	1621543_x_at	CF202537.1	hypothetical protein LOC100256781	-	4e-1	At1g76680	OPR1	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	4e-19	95	Arabidopsis thaliana	At4g33530	829492	KUP5	potassium transporter	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	4e-88	325	Glycine max	Gma.2816.2.S1_at	BI701000	-	-	1e-10	At4g33530	KUP5	C.G.	S.X.	Please select
0.03	7e-4	44	Hordeum vulgare	Contig15800_at	Contig15800	-	-	9e+0	Atmg00070	-	C.G.	S.X.	Please select
0.15	2e-16	87	Oryza sativa	Os.19000.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	6e-53	208	Populus trichocarpa	Ptp.3755.1.S1_at	CV231456	hypothetical protein	-	4e-26	At5g09400	KUP7	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	1e-40	167	Triticum aestivum	Ta.11997.1.S1_at	BQ171229	-	-	8e-6	At5g09400	KUP7	C.G.	S.X.	Please select
0.07	7e-7	54	Zea mays	Zm.1780.1.A1_at	CF629323	hypothetical protein LOC100274241	-	4e-2	At5g09400	KUP7	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage