Gene omics information

Query gene ID	1619831_a_at
Gene name	hypothetical protein LOC100252479
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	95.6	1619831_a_at	BQ794924	hypothetical protein LOC100252479	-	6e-10	At4g32460	-	S.X.	H.G.	Please select
0.76	91.5	1620496_at	CF214365	hypothetical protein LOC100257468	-	3e-7	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	S.X.	H.G.	Please select
0.53	75.2	1616183_at	CF405742	hypothetical protein LOC100257468	-	3e-1	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	S.X.	H.G.	Please select
0.52	73.9	1617750_at	CB005665	-	-	3e-20	At5g35180	phosphoinositide binding	S.X.	H.G.	Please select
0.47	67.7	1607101_s_at	CF603353	hypothetical protein LOC100245611	-	2e-67	At3g11830	chaperonin, putative	S.X.	H.G.	Please select
0.46	66.5	1614987_at	CF609746	hypothetical protein LOC100241685	-	1e-15	At1g51340	MATE efflux family protein	S.X.	H.G.	Please select
0.44	64.1	1612181_at	CF518786	hypothetical protein LOC100241990	-	7e-6	At4g14100	transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.44	64.1	1620674_at	CF603413	-	-	2e-5	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	S.X.	H.G.	Please select
0.43	61.5	1609680_at	CB340260	hypothetical protein LOC100263250	-	8e-37	At1g06820	CRTISO (CAROTENOID ISOMERASE)	S.X.	H.G.	Please select
0.40	57.7	1614416_at	CD013543	hypothetical protein LOC100244960	-	8e-6	At5g58900	myb family transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	99.0	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.4	98.9	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.0	98.7	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.0	98.7	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.8	98.6	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.4	98.3	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.3	98.2	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.2	98.2	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	5e-162	569	1614520_s_at	BQ794149	hypothetical protein LOC100252479	-	5e+0	At3g55672	-	C.G.	S.X.	Please select
0.23	7e-47	186	1613446_at	CF405907	-	-	3e+0	At5g59050	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	1609590_s_at	CB981725	hypothetical protein LOC100253669	-	3e-25	At2g34510	-	C.G.	S.X.	Please select
0.02	2e+0	32	1622437_at	CB971745	hypothetical protein LOC100266373	-	2e-1	At3g28700	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1620539_at	CF216000	hypothetical protein LOC100267732	-	3e-1	At2g37975	-	C.G.	S.X.	Please select
0.02	2e+0	32	1612112_at	CB970058	callose synthase-like	-	3e-67	At3g07160	ATGSL10 (glucan synthase-like 10)	C.G.	S.X.	Please select
0.02	2e+0	32	1610589_at	CB979189	hypothetical protein LOC100248961	-	4e-23	At4g38040	exostosin family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1610373_at	CF517404	hypothetical protein LOC100242638	-	1e-20	At2g26210	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1608883_at	CA818676	hypothetical protein LOC100243946	-	5e-88	At4g26270	PFK3 (PHOSPHOFRUCTOKINASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-10	65	Arabidopsis thaliana	At4g32460	829381	-	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	3e-49	196	Glycine max	Gma.12342.1.S1_s_at	CD405864	-	-	3e-6	At5g11420	-	C.G.	S.X.	Please select
0.06	8e-14	77	Hordeum vulgare	Contig10884_at	Contig10884	-	-	3e-3	At5g17510	unknown protein	C.G.	S.X.	Please select
0.05	3e-7	57	Oryza sativa	Os02g0205200	AK106819.1	-	Protein of unknown function DUF642 family protein	5e-2	At2g15930	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-22	107	Populus trichocarpa	Ptp.5205.1.S1_at	BU888886	hypothetical protein	-	3e-9	At5g25460	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.24856.2.S1_x_at	CA710928	-	-	2e-1	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select
0.04	1e-6	54	Zea mays	Zm.17666.1.A1_at	CF635462	hypothetical protein LOC100272483	-	2e+0	At5g25460	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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