CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619820_s_at

Gene name hypothetical protein LOC100245630

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 83.2 1619820_s_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) S.X. H.G.
0.91 98.8 1620683_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) S.X. H.G.
0.71 89.5 1608259_at CF205412.1 hypothetical protein LOC100255358 - 2e-6 At5g59520 ZIP2 S.X. H.G.
0.67 87.9 1622760_at CD719223 hypothetical protein LOC100266427 - 1e+0 At3g61920 unknown protein S.X. H.G.
0.40 57.7 1618607_s_at CB972339 hypothetical protein LOC100255358 - 1e-3 At1g55910 ZIP11 (ZINC TRANSPORTER 11 PRECURSOR) S.X. H.G.
0.40 57.7 1617846_at CF210020 hypothetical protein LOC100242395 - 2e-47 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.5 99.6 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.0 99.1 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9 98.6 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.0 98.0 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7 97.7 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4 97.3 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
4.2 97.1 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
4.0 96.7 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.9 96.6 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62
3.7 96.2 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1705 1620683_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) C.G. S.X.
1.00 0 1705 1615110_at BM437600 - - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) C.G. S.X.
0.83 0 1162 1618808_at CF204376.1 - - 1e-25 At4g29670 thioredoxin family protein C.G. S.X.
0.03 1e-1 36 1622037_s_at CF205545.1 hypothetical protein LOC100260578 - 3e-16 At2g33270 ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) C.G. S.X.
0.02 1e-1 36 1616302_at CB912509 ripening-related protein-like - 4e-11 At5g02230 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.02 1e-1 36 1615681_at BQ799650 hypothetical protein LOC100260578 - 7e-38 At1g08570 ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4) C.G. S.X.
0.02 1e-1 36 1615356_at CF403414 hypothetical protein LOC100267033 - 3e-5 At3g53310 transcriptional factor B3 family protein C.G. S.X.
0.03 1e-1 36 1610592_at CF205545.1 - - 3e-16 At2g33270 ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) C.G. S.X.
0.01 1e-1 36 1610433_at CF405534 hypothetical protein LOC100250736 - 2e-66 At1g77810 galactosyltransferase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 8e-9 61 Arabidopsis thaliana At4g26160 828722 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase. - - - C.G. S.X.
0.47 7e-81 301 Glycine max GmaAffx.93066.1.S1_s_at CF808791 - - 7e-36 At4g29670 thioredoxin family protein C.G. S.X.
0.13 2e-8 59 Hordeum vulgare Contig21286_at Contig21286 - - 4e-23 At4g29670 thioredoxin family protein C.G. S.X.
0.28 7e-20 99 Oryza sativa Os05g0200100 AK061208.1 - Thioredoxin-related domain containing protein 3e-30 At4g29670 thioredoxin family protein C.G. S.X.
0.35 2e-71 270 Populus trichocarpa PtpAffx.7388.2.S1_at CV244716 hypothetical protein - 1e-11 At4g29670 thioredoxin family protein C.G. S.X.
0.15 1e-7 57 Triticum aestivum Ta.6434.2.S1_at CA633721 - - 1e-11 At4g29670 thioredoxin family protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.8890.2.A1_at CA829436 Hypothetical protein LOC100191584 - 1e-1 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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