CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619790_s_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1619790_s_at AY427188.1 - - 5e-1 At3g53550 - S.X. H.G.
0.36 50.7 1610150_at CF212883 hypothetical protein LOC100242762 - 3e-73 At5g17920 ATMS1 S.X. H.G.
0.21 24.0 1616136_at CF215091 hypothetical protein LOC100242762 - 1e-31 At5g17920 ATMS1 S.X. H.G.
0.18 19.4 1609045_at CF214620 isoflavone reductase-like protein 4 - 2e-7 At1g75280 isoflavone reductase, putative S.X. H.G.
0.16 16.7 1621511_at CF212324 hypothetical protein LOC100263809 - 2e+0 At2g17710 unknown protein S.X. H.G.
0.01 2.1 1608896_at BQ796455 hypothetical protein LOC100243163 - 7e-12 At2g28110 FRA8 (FRAGILE FIBER 8) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.6 100.0 GSM436423 V. riparia (VR, PI588259) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
16.1 99.9 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
15.0 99.9 GSM147684 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 13
12.7 99.8 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
11.3 99.7 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.2 99.1 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
7.0 99.1 GSM436384 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436385 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.9 97.9 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 2e-142 502 1616138_at AY427188.1 - - 5e-1 At3g53550 - C.G. S.X.
1.00 2e-142 502 1612323_at AY427188.1 hypothetical LOC100257822 - 5e-1 At3g53550 - C.G. S.X.
1.00 2e-142 502 1608520_x_at AY427188.1 hypothetical LOC100257822 - 5e-1 At3g53550 - C.G. S.X.
0.55 3e-70 262 1611415_at AY427153.1 - - 3e-4 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
0.55 3e-70 262 1607626_at AY427153.1 - - 3e-4 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
0.85 3e-61 232 1614082_at AY427125.1 - - 2e+0 At4g10360 - C.G. S.X.
0.85 3e-61 232 1610289_at AY427125.1 hypothetical protein LOC100242443 - 2e+0 At4g10360 - C.G. S.X.
0.77 5e-60 228 1620649_at AY427191.1 - - 5e-1 At3g53550 - C.G. S.X.
0.77 5e-60 228 1616891_at AY427191.1 - - 5e-1 At3g53550 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 34 Arabidopsis thaliana At3g53550 824523 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.11 4e-2 38 Glycine max Gma.66.1.S1_at AY048864.1 resistance protein - 4e-3 At4g13160 unknown protein C.G. S.X.
0.07 9e-1 32 Hordeum vulgare AF032681_at AF032681 - - 6e-1 At1g75717 unknown protein C.G. S.X.
0.02 9e-1 34 Oryza sativa Os11g0176300 9639.m00689 - Hypothetical plant protein family protein 1e-17 At1g35510 unknown protein C.G. S.X.
0.08 7e-1 34 Populus trichocarpa PtpAffx.220916.1.S1_s_at pmrna37399 hypothetical protein /// hypothetical protein /// cc-nbs-lrr resistance protein /// cc-nbs resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs resistance protein /// cc-nbs resistance protein /// cc-nbs resistance protein /// cc-nbs resistance protein /// nbs-lrr resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein - 4e-1 At5g25170 unknown protein C.G. S.X.
0.09 5e-1 34 Triticum aestivum TaAffx.84852.1.S1_at CA627941 - - 1e+0 At2g24970 unknown protein C.G. S.X.
0.04 1e+1 28 Zea mays ZmAffx.485.1.S1_at AI691349 - - 8e-1 Atmg00140 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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