Gene omics information

Query gene ID	1619784_at
Gene name	hypothetical protein LOC100248174
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	68.8	1619784_at	CF209299	hypothetical protein LOC100248174	-	2e-9	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	S.X.	H.G.	Please select
0.71	89.5	1620494_at	CF414991	-	-	1e+0	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select
0.63	84.3	1611458_at	CF207715	hypothetical protein LOC100243644	-	2e-18	At2g35530	bZIP transcription factor family protein	S.X.	H.G.	Please select
0.54	75.7	1612660_at	CB980017	hypothetical protein LOC100244096	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	S.X.	H.G.	Please select
0.50	72.7	1608653_at	CB975644	hypothetical protein LOC100263217	-	5e+0	At4g15020	DNA binding / protein dimerization	S.X.	H.G.	Please select
0.48	68.8	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	S.X.	H.G.	Please select
0.37	51.7	1616823_at	CF608764	hypothetical protein LOC100257426	-	6e-7	At3g21175	ZML1 (ZIM-LIKE 1)	S.X.	H.G.	Please select
0.35	48.5	1617406_s_at	CF415339	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	S.X.	H.G.	Please select
0.32	43.1	1613582_at	CF204478.1	hypothetical protein LOC100261825	-	6e-12	At5g14170	CHC1	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.2	89.9	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.8	86.0	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	34	1617068_at	CF519166	hypothetical protein LOC100246568	-	8e-12	At1g10760	SEX1 (STARCH EXCESS 1)	C.G.	S.X.	Please select
0.02	4e-1	34	1613811_a_at	CB920849	VVTL1	-	5e-13	At1g07720	KCS3 (3-KETOACYL-COA SYNTHASE 3)	C.G.	S.X.	Please select
0.02	4e-1	34	1613074_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	C.G.	S.X.	Please select
0.02	4e-1	34	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	C.G.	S.X.	Please select
0.03	4e-1	34	1607283_at	CF373762	hypothetical protein LOC100251177	-	4e+0	At5g28615	-	C.G.	S.X.	Please select
0.01	2e+0	32	1622794_at	CF211821	hypothetical protein LOC100254649	-	3e-6	At2g37200	integral membrane protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1620419_at	BQ794848	hypothetical protein LOC100241492	-	5e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.02	2e+0	32	1617383_at	CD719640	-	-	1e+0	At2g39630	glycosyl transferase family 2 protein	C.G.	S.X.	Please select
0.03	2e+0	32	1617160_at	CB972995	-	-	9e-1	At1g25240	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-9	63	Arabidopsis thaliana	At5g23450	832411	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	3e-48	192	Glycine max	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please select
0.11	1e-8	59	Hordeum vulgare	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	C.G.	S.X.	Please select
0.05	1e-11	71	Oryza sativa	Os04g0541500	AK121106.1	-	Diacylglycerol kinase, catalytic region domaincontaining protein	7e-6	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	7e-31	135	Populus trichocarpa	PtpAffx.11478.1.S1_s_at	DN493646	hypothetical protein	-	5e-11	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	9e-2	38	Triticum aestivum	Ta.29228.1.S1_at	CA653745	-	-	9e-1	At5g13140	-	C.G.	S.X.	Please select
0.04	4e-2	38	Zea mays	Zm.2973.1.A1_at	AW017746	hypothetical protein LOC100192564	-	1e+0	At3g52620	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage