Gene omics information

Query gene ID	1619750_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	95.2	1619750_at	CB977900	-	-	5e-1	At1g44941	unknown protein	S.X.	H.G.	Please select
0.62	83.3	1611070_at	CF372775	hypothetical protein LOC100253609	-	6e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	S.X.	H.G.	Please select
0.54	75.7	1613355_at	CB922574	hypothetical protein LOC100260952	-	6e-12	At5g07360	amidase family protein	S.X.	H.G.	Please select
0.44	64.1	1621867_at	CF516530	-	-	5e-2	At5g66000	unknown protein	S.X.	H.G.	Please select
0.43	61.5	1613254_at	CF568816	-	-	7e-8	At1g29980	-	S.X.	H.G.	Please select
0.41	58.7	1616820_at	CF210812	-	-	2e-1	At3g27835	-	S.X.	H.G.	Please select
0.41	58.7	1621279_at	CB970186	-	-	7e+0	At5g46980	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.40	57.7	1614852_at	CF209187	hypothetical protein LOC100264683	-	7e-2	At2g22080	unknown protein	S.X.	H.G.	Please select
0.40	57.7	1614053_at	CF516548	hypothetical protein LOC100252212	-	5e-1	At1g58007	unknown protein	S.X.	H.G.	Please select
0.39	54.9	1610669_at	CF208675	hypothetical protein LOC100259403	-	6e-2	At1g69825	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.8	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.2	98.8	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	1607971_at	CF516939	hypothetical protein LOC100252506	-	5e-13	At2g21970	SEP2 (STRESS ENHANCED PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1622088_at	CD720317	-	-	3e-1	At2g21370	xylulose kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	1619240_at	CB348525	hypothetical protein LOC100250717	-	6e-7	At4g33985	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618293_at	CD720317	-	-	3e-1	At2g21370	xylulose kinase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1618115_at	CD802345	hypothetical protein LOC100253328	-	1e+0	At2g45950	ASK20 (ARABIDOPSIS SKP1-LIKE 20)	C.G.	S.X.	Please select
0.02	2e+0	32	1617949_at	CF213069	hypothetical protein LOC100241470	-	1e-3	At3g09735	DNA-binding S1FA family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1617840_at	BQ796824	hypothetical protein LOC100253425	-	5e-16	At4g01150	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616098_at	CF514166	hypothetical protein LOC100244716	-	3e-4	At5g54840	SGP1	C.G.	S.X.	Please select
0.02	2e+0	32	1615682_s_at	CA809122	hypothetical protein LOC100247119	-	2e-15	At4g38740	ROC1 (ROTAMASE CYP 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At1g44941	6241409	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	PsAffx.CL97Contig1_at	PsAffx.CL97Contig1	-	-	3e-35	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HV_CEb0002K12r2_x_at	HV_CEb0002K12r2	-	-	2e+0	At2g40650	pre-mRNA splicing factor PRP38 family protein	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os02g0725600	AK058341.1	-	Protein of unknown function DUF425 family protein	1e-7	At5g47680	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.16432.1.S1_a_at	DN485066	hypothetical protein	-	3e-8	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.8231.1.S1_s_at	CA630824	-	-	1e+0	At2g38360	PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.1036.1.A1_at	AI881726	-	-	1e-1	At2g43795	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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