CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619728_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1619728_at BM437855 - - 1e-35 At3g12160 RABA4D (RAB GTPASE HOMOLOG A4D) S.X. H.G.
0.17 18.2 1620717_at BQ799683 hypothetical protein LOC100255378 - 3e-15 At5g58430 ATEXO70B1 (exocyst subunit EXO70 family protein B1) S.X. H.G.
0.10 10.3 1606436_s_at CB007992 hypothetical protein LOC100243286 - 7e-4 At4g30430 TET9 (TETRASPANIN9) S.X. H.G.
0.09 9.4 1606505_at CB970568 hypothetical protein LOC100257948 - 3e+0 At3g21570 unknown protein S.X. H.G.
0.02 3.2 1618802_s_at CF205022.1 hypothetical protein LOC100264326 - 9e-4 At1g34780 ATAPRL4 (APR-like 4) S.X. H.G.
0.01 2.1 1620463_at CD013332 hypothetical protein LOC100265246 - 1e+0 At2g27970 CKS2 (CDK-subunit 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 99.2 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
7.2 99.1 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436365 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1808 1607044_at BM437855 hypothetical protein LOC100246065 - 1e-35 At3g12160 RABA4D (RAB GTPASE HOMOLOG A4D) C.G. S.X.
0.25 5e-29 127 1609466_at CD797661 hypothetical protein LOC100262838 - 3e-61 At5g65270 AtRABA4a (Arabidopsis Rab GTPase homolog A4a) C.G. S.X.
0.08 1e-17 89 1621911_at CF214080 hypothetical protein LOC100252396 - 3e-64 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) C.G. S.X.
0.07 4e-14 77 1615972_at CF215988 hypothetical protein LOC100249712 - 9e-33 At5g45750 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) C.G. S.X.
0.07 9e-9 59 1618348_at CF373264 hypothetical protein LOC100265921 - 1e-47 At5g45750 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) C.G. S.X.
0.04 6e-4 44 1615231_at CF607773 hypothetical protein LOC100254995 - 1e-19 At2g31680 AtRABA5d (Arabidopsis Rab GTPase homolog A5d) C.G. S.X.
0.03 6e-4 44 1608533_at CF212662 hypothetical protein LOC100242285 - 2e-18 At1g73640 AtRABA6a (Arabidopsis Rab GTPase homolog A6a) C.G. S.X.
0.02 9e-3 40 1615173_at CF518560 hypothetical protein LOC100260965 - 1e-112 At4g35860 ATGB2 (GTP-BINDING 2) C.G. S.X.
0.02 9e-3 40 1607281_at CB976932 hypothetical protein LOC100247365 - 5e-115 At5g55190 RAN3 (RAN GTPASE 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-35 151 Arabidopsis thaliana At3g12160 820393 RABA4D (RAB GTPASE HOMOLOG A4D) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity. - - - C.G. S.X.
0.24 2e-31 137 Glycine max Gma.520.1.S1_at CD395711 small GTP-binding protein - 5e-50 At5g65270 AtRABA4a (Arabidopsis Rab GTPase homolog A4a) C.G. S.X.
0.23 1e-33 143 Hordeum vulgare Contig11759_at Contig11759 - - 1e-5 At3g12160 RABA4D (RAB GTPASE HOMOLOG A4D) C.G. S.X.
0.25 8e-32 139 Oryza sativa Os09g0281700 X59276.1 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C C.G. S.X.
0.38 7e-47 188 Populus trichocarpa PtpAffx.216780.1.S1_at pmrna31776 hypothetical protein - 6e-58 At3g12160 RABA4D (RAB GTPASE HOMOLOG A4D) C.G. S.X.
0.31 2e-37 157 Triticum aestivum Ta.12940.1.A1_at CD491400 - - 2e-8 At5g47960 ATRABA4C C.G. S.X.
0.19 9e-16 83 Zea mays Zm.14385.1.S1_at AW059976 hypothetical protein LOC100272235 - 1e-23 At5g65270 AtRABA4a (Arabidopsis Rab GTPase homolog A4a) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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