Gene omics information

Query gene ID	1619717_at
Gene name	hypothetical protein LOC100255647
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	95.1	1619717_at	CF210684	hypothetical protein LOC100255647	-	1e-67	At5g54190	PORA	S.X.	H.G.	Please select
0.56	79.4	1609122_at	CB003768	hypothetical protein LOC100267142	-	7e-27	At2g04530	CPZ	S.X.	H.G.	Please select
0.55	77.3	1616118_at	CD006870	hypothetical protein LOC100246658	-	8e-1	At5g03220	transcriptional co-activator-related	S.X.	H.G.	Please select
0.52	73.9	1606604_at	CF373854	hypothetical protein LOC100241081	-	2e-6	At2g39670	radical SAM domain-containing protein	S.X.	H.G.	Please select
0.48	68.8	1620880_at	CB002256	hypothetical protein LOC100267434	-	3e-1	At3g15110	unknown protein	S.X.	H.G.	Please select
0.48	68.8	1619902_at	CD006870	-	-	8e-1	At5g03220	transcriptional co-activator-related	S.X.	H.G.	Please select
0.44	64.1	1622299_s_at	CK136935.1	hypothetical protein LOC100255647	-	7e-10	At5g54190	PORA	S.X.	H.G.	Please select
0.44	64.1	1607621_at	CF406023	hypothetical protein LOC100259213	-	2e-5	At5g13400	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please select
0.42	60.1	1620411_at	CB343828	hypothetical protein LOC100248931	-	2e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select
0.40	57.7	1611466_at	CF372402	hypothetical protein LOC100253536	-	7e-26	At4g19100	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.7	99.8	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
10.4	99.7	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
8.7	99.5	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27
8.2	99.4	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
8.1	99.4	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
7.9	99.3	GSM147704	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	33
7.3	99.2	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
6.3	98.8	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
5.4	98.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
5.3	98.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-146	517	1622299_s_at	CK136935.1	hypothetical protein LOC100255647	-	7e-10	At5g54190	PORA	C.G.	S.X.	Please select
0.35	2e-146	517	1620451_at	CK136935.1	-	-	7e-10	At5g54190	PORA	C.G.	S.X.	Please select
0.35	2e-146	517	1607771_at	CK136935.1	-	-	7e-10	At5g54190	PORA	C.G.	S.X.	Please select
0.41	1e-95	349	1620005_at	CK136937.1	-	-	4e+0	At4g16805	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	1607226_at	CF517019	hypothetical protein LOC100255588	-	6e-2	At1g10770	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	9e-1	34	1620330_at	CB981833	-	-	7e-11	At3g60590	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	1612535_s_at	CB348535	hypothetical protein LOC100246597	-	4e-3	At3g55040	GSTL2	C.G.	S.X.	Please select
0.01	9e-1	34	1606520_at	CF212829	hypothetical protein LOC100261962	-	6e-10	At5g02790	In2-1 protein, putative	C.G.	S.X.	Please select
0.02	4e+0	32	1622423_at	CB342360	similar to Bifunctional nitrilase/nitrile hydratase NIT4B	-	1e-13	At5g22300	NIT4 (NITRILASE 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	1e-67	258	Arabidopsis thaliana	At5g54190	835507	PORA	light-dependent NADPH:protochlorophyllide oxidoreductase A	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	8e-159	561	Glycine max	Gma.10890.1.S1_at	BE209713	-	-	2e-81	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	C.G.	S.X.	Please select
0.07	1e-28	127	Hordeum vulgare	Contig2762_at	Contig2762	NADPH dehydrogenase	-	1e-14	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	C.G.	S.X.	Please select
0.11	2e-27	125	Oryza sativa	Os10g0496900	CB644074	-	NADPH:protochlorophyllide oxidoreductase porB(Fragment)	3e-8	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.50	3e-180	632	Populus trichocarpa	Ptp.4587.1.S1_x_at	BP934936	hypothetical protein	-	3e-86	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	7e-26	119	Triticum aestivum	Ta.3258.2.S1_at	CA622308	-	-	7e-8	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	C.G.	S.X.	Please select
0.17	2e-27	123	Zea mays	Zm.7043.2.S1_a_at	CO528824	hypothetical protein LOC100194154	-	5e-8	At1g03630	POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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