Gene omics information

Query gene ID	1619715_at
Gene name	hypothetical protein LOC100243011
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1619715_at	CF207152	hypothetical protein LOC100243011	-	5e-39	At1g30470	SIT4 phosphatase-associated family protein	S.X.	H.G.	Please select
0.63	84.3	1622731_at	CF403287	hypothetical protein LOC100257054	-	8e-12	At3g55070	-	S.X.	H.G.	Please select
0.63	84.3	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	S.X.	H.G.	Please select
0.61	83.2	1606735_at	CB970224	hypothetical protein LOC100249353	-	4e+0	At3g15420	unknown protein	S.X.	H.G.	Please select
0.52	73.9	1613731_at	CF513972	hypothetical protein LOC100248748	-	2e-5	At5g63840	RSW3 (RADIAL SWELLING 3)	S.X.	H.G.	Please select
0.44	64.1	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	S.X.	H.G.	Please select
0.43	61.5	1613905_at	CF210463	hypothetical protein LOC100254141	-	3e-13	At5g08160	ATPK3	S.X.	H.G.	Please select
0.37	51.7	1613769_at	CB970019	hypothetical protein LOC100265267	-	4e-48	At1g51690	ATB ALPHA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	93.8	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.6	92.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.2	89.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	36	1611955_at	CF414616	similar to chloroplast omega-6 fatty acid desaturase	-	4e-54	At4g30950	FAD6 (FATTY ACID DESATURASE 6)	C.G.	S.X.	Please select
0.02	9e-1	34	1621858_at	CB914671	hypothetical protein LOC100266437	-	2e-5	At1g17720	ATB BETA	C.G.	S.X.	Please select
0.01	9e-1	34	1619754_at	BQ800202	similar to cytochrome c oxidase family protein-like	-	3e-43	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.01	9e-1	34	1614550_at	CB969128	hypothetical protein LOC100247670	-	1e-1	At3g61400	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.01	9e-1	34	1608265_at	CD801767	hypothetical protein LOC100260628	-	4e-1	At2g34620	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please select
0.01	3e+0	32	1620756_at	CD003945	similar to ATNMNAT (A. THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE); nicotinamide-nucleotide adenylyltransferase/ nicotinate-nucleotide adenylyltransferase	-	3e-21	At5g55810	AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)	C.G.	S.X.	Please select
0.01	3e+0	32	1620444_at	CD715631	-	-	1e-29	At5g57190	PSD2 (phosphatidylserine decarboxylase 2)	C.G.	S.X.	Please select
0.01	3e+0	32	1616982_at	CD003945	-	-	3e-21	At5g55810	AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)	C.G.	S.X.	Please select
0.01	3e+0	32	1616691_at	CD715631	similar to phosphatidylserine decarboxylase	-	1e-29	At5g57190	PSD2 (phosphatidylserine decarboxylase 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	5e-39	163	Arabidopsis thaliana	At1g30470	839926	SIT4 phosphatase-associated family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BMOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	3e-47	190	Glycine max	GmaAffx.64338.2.S1_at	BE475311	-	-	6e-33	At1g30470	SIT4 phosphatase-associated family protein	C.G.	S.X.	Please select
0.13	2e-39	163	Hordeum vulgare	Contig5538_at	Contig5538	-	-	1e-24	At1g30470	SIT4 phosphatase-associated family protein	C.G.	S.X.	Please select
0.18	1e-34	149	Oryza sativa	OsAffx.23603.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-9	65	Populus trichocarpa	PtpAffx.138269.1.S1_at	AI163248	hypothetical protein	-	7e-2	At2g28360	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e-39	165	Triticum aestivum	Ta.9654.1.S1_at	CD454382	-	-	5e-28	At1g30470	SIT4 phosphatase-associated family protein	C.G.	S.X.	Please select
0.08	1e-9	63	Zea mays	Zm.4753.1.S1_at	CF636516	-	-	3e-3	At1g07990	SIT4 phosphatase-associated family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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