Gene omics information

Query gene ID	1619711_at
Gene name	hypothetical protein LOC100248740
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1619711_at	CF211123	hypothetical protein LOC100248740	-	3e-1	At3g48940	remorin family protein	S.X.	H.G.	Please select
0.35	48.5	1606743_at	CF210771	hypothetical protein LOC100250210	-	4e-1	At5g23260	TT16 (TRANSPARENT TESTA16)	S.X.	H.G.	Please select
0.27	34.0	1614338_at	CF511119	-	-	5e-1	At5g65400	unknown protein	S.X.	H.G.	Please select
0.16	16.7	1617244_s_at	CB341989	hypothetical protein LOC100262315	-	1e-23	At4g22150	PUX3	S.X.	H.G.	Please select
0.14	14.4	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	S.X.	H.G.	Please select
0.11	11.3	1610421_at	CF212555	hypothetical protein LOC100258884	-	4e-48	At5g54680	ILR3 (iaa-leucine resistant3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	95.2	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.1	89.1	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-8	57	1618634_at	CF211062	hypothetical protein LOC100248740	-	5e-1	At1g64355	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	1607388_at	CF204480.1	-	-	3e-26	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1606701_s_at	CF514905	hypothetical protein LOC100260907	-	2e-28	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622536_at	CF512447	-	-	3e-1	At1g07480	transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)	C.G.	S.X.	Please select
0.03	2e+0	32	1622159_at	CB981829	-	-	1e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1617946_at	CF519131	hypothetical protein LOC100263216	-	1e-1	At1g30660	nucleic acid binding	C.G.	S.X.	Please select
0.03	2e+0	32	1617179_at	CF414958	-	-	2e-1	At3g30370	-	C.G.	S.X.	Please select
0.03	2e+0	32	1616340_at	CF515674	hypothetical protein LOC100259651	-	6e-9	At5g48160	OBE2 (OBERON2)	C.G.	S.X.	Please select
0.02	6e+0	30	1621433_s_at	CD801322	hypothetical protein LOC100265528	-	2e-64	At5g02960	40S ribosomal protein S23 (RPS23B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At3g48940	824055	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OPBMFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	8e-9	61	Glycine max	Gma.18095.1.S1_at	AW568814	-	-	7e-7	At5g53930	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	EBpi01_SQ005_J19_at	EBpi01_SQ005_J19	-	-	8e-1	At4g27350	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	36	Oryza sativa	Os.48943.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-7	57	Populus trichocarpa	PtpAffx.214808.1.S1_at	pmrna28664	hypothetical protein	-	1e-10	At5g53930	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	Ta.15432.1.S1_at	CA484643	-	-	2e+0	At2g35480	unknown protein	C.G.	S.X.	Please select
0.03	9e+0	30	Zea mays	Zm.6306.2.A1_at	AI691326	Protein kinase catalytic domain	-	1e-10	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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