CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619670_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 68.8 1619670_at CF568831 - - 3e-19 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) S.X. H.G.
0.35 48.5 1608135_at CF206119.1 - - 1e+0 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) S.X. H.G.
0.32 43.1 1622555_at CD010705 - - 3e-11 At3g17970 atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III) S.X. H.G.
0.31 41.3 1615204_at CF371804 - - 1e+0 At3g21580 cobalt ion transmembrane transporter S.X. H.G.
0.25 30.5 1618733_at CB004465 - - 7e-6 At1g66970 SVL2 (SHV3-LIKE 2) S.X. H.G.
0.22 25.6 1607040_at CF568797 - - 5e-24 At1g54610 protein kinase family protein S.X. H.G.
0.21 24.0 1614261_at CD717598 - - 1e+0 At4g23885 unknown protein S.X. H.G.
0.20 22.4 1618712_at CB003306 - - 3e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) S.X. H.G.
0.19 20.9 1615924_at CD715417 - - 2e-8 At3g09970 calcineurin-like phosphoesterase family protein S.X. H.G.
0.15 15.6 1620333_at CF608264 - - 1e-10 At3g08020 protein binding / zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 98.4 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
4.3 97.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
4.0 96.7 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.1 94.6 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
2.6 92.5 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 34 1622524_at CA811253 hypothetical protein LOC100254356 - 4e-9 At2g24830 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein C.G. S.X.
0.03 3e-1 34 1621501_at CB342916 hypothetical protein LOC100243553 - 1e-3 At1g57820 VIM1 (VARIANT IN METHYLATION 1) C.G. S.X.
0.03 3e-1 34 1613018_at CB971117 hypothetical protein LOC100264115 - 7e-2 At3g06280 - C.G. S.X.
0.03 1e+0 32 1614291_at CD007866 - - 1e+0 At4g38401 unknown protein C.G. S.X.
0.01 1e+0 32 1613208_at CF209522 hypothetical protein LOC100267894 - 8e-38 At1g16610 SR45 C.G. S.X.
0.03 1e+0 32 1610519_at CD007866 - - 1e+0 At4g38401 unknown protein C.G. S.X.
0.02 1e+0 32 1608749_at CB980219 hypothetical protein LOC100241808 - 5e-10 At1g21170 SEC5B C.G. S.X.
0.02 1e+0 32 1606658_at CB981496 hypothetical protein LOC100242421 /// hypothetical protein LOC100249803 - 5e-26 At2g22870 EMB2001 (embryo defective 2001) C.G. S.X.
0.03 5e+0 30 1622146_at CF205406.1 hypothetical protein LOC100256891 - 4e-13 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 3e-19 95 Arabidopsis thaliana At1g12410 837797 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). - - - C.G. S.X.
0.23 3e-32 139 Glycine max Gma.9121.1.S1_at CD403401 - - 2e-34 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.13 2e-3 42 Hordeum vulgare Contig4497_at Contig4497 - - 1e-2 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.20 4e-17 89 Oryza sativa Os06g0136800 AK099815.1 - Peptidase S14, ClpP family protein 2e-10 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.34 2e-55 216 Populus trichocarpa PtpAffx.98597.1.S1_at CK096551 hypothetical protein - 1e-47 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.06 4e-3 42 Triticum aestivum Ta.7649.3.A1_a_at BQ161111 - - 6e-3 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.17 1e-10 65 Zea mays Zm.6642.1.S1_at CD437363 PL5L15 - 2e-1 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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