Gene omics information

Query gene ID	1619658_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	77.3	1619658_at	CF371851	-	-	4e-15	At2g14960	GH3.1	S.X.	H.G.	Please select
0.47	67.7	1619484_at	CA814697	hypothetical protein LOC100245801	-	3e-4	At5g21482	CKX7 (CYTOKININ OXIDASE 7)	S.X.	H.G.	Please select
0.12	12.1	1614504_s_at	CF372317	hypothetical protein LOC100246222	-	7e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	S.X.	H.G.	Please select
0.08	8.5	1611466_at	CF372402	hypothetical protein LOC100253536	-	7e-26	At4g19100	unknown protein	S.X.	H.G.	Please select
0.07	7.8	1617563_s_at	CF415066	-	-	2e-1	At5g27495	ion channel inhibitor	S.X.	H.G.	Please select
0.06	6.8	1607707_at	CB341307	hypothetical protein LOC100260840	-	4e+0	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	S.X.	H.G.	Please select
0.05	6.0	1612095_at	CB978502	hypothetical protein LOC100264474	-	2e-10	At1g25440	zinc finger (B-box type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	99.8	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
13.4	99.8	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
11.7	99.7	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
9.8	99.6	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
6.6	98.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.1	98.1	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.6	97.6	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
4.3	97.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
3.9	96.6	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	716	1610880_s_at	CF371851	hypothetical protein LOC100250868	-	4e-15	At2g14960	GH3.1	C.G.	S.X.	Please select
0.29	2e-29	127	1620662_at	CB981820	hypothetical protein LOC100250741	-	1e-25	At2g14960	GH3.1	C.G.	S.X.	Please select
0.02	6e-2	36	1620186_at	CF511359	-	-	7e-1	At5g65390	AGP7	C.G.	S.X.	Please select
0.04	2e-1	34	1608343_at	CF201782.1	hypothetical protein LOC100258381	-	1e-4	At1g12830	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	32	1619656_at	CB347776	hypothetical protein LOC100248396	-	2e-1	At1g25300	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please select
0.03	4e+0	30	1622487_at	CF215822	hypothetical protein LOC100260885	-	5e-21	At1g09610	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	1620944_at	CF373593	hypothetical protein LOC100254978	-	1e+0	At5g49260	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	1619601_at	CF972321.1	hypothetical protein LOC100248187	-	2e-24	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	C.G.	S.X.	Please select
0.03	4e+0	30	1615842_at	CF972321.1	-	-	2e-24	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-15	81	Arabidopsis thaliana	At2g14960	815985	GH3.1	encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	5e-3	42	Glycine max	GmaAffx.91114.1.S1_s_at	CF806839	-	-	3e-19	At4g37390	BRU6	C.G.	S.X.	Please select
0.15	7e-12	69	Hordeum vulgare	Contig12102_at	Contig12102	-	-	3e-1	At2g14960	GH3.1	C.G.	S.X.	Please select
0.04	1e-13	77	Oryza sativa	Os07g0592600	AK101193.1	-	GH3 homolog (Fragment)	3e-16	At2g14960	GH3.1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	2e-11	69	Populus trichocarpa	PtpAffx.419.1.A1_at	CV253156	-	-	2e-18	At2g14960	GH3.1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-13	75	Triticum aestivum	Ta.4110.1.S1_at	BQ161714	-	-	2e-6	At2g14960	GH3.1	C.G.	S.X.	Please select
0.05	2e-15	81	Zea mays	Zm.13354.1.S1_s_at	AW067009	indole-3-acetic acid-amido synthetase GH3.8	-	4e-12	At2g14960	GH3.1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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