CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619642_at

Gene name hypothetical protein LOC100241575

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1619642_at CF512453 hypothetical protein LOC100241575 - 3e-28 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) S.X. H.G.
0.77 92.3 1607732_at AF020709.1 chalcone synthase - 7e-60 At5g13930 TT4 (TRANSPARENT TESTA 4) S.X. H.G.
0.67 87.9 1612134_at CF204393.1 similar to anthocyanidin reductase - 6e-3 At2g02400 cinnamoyl-CoA reductase family S.X. H.G.
0.60 81.9 1609765_s_at CB007712 leucoanthocyanidin dioxygenase - 6e-20 At4g22880 LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE) S.X. H.G.
0.46 66.5 1620675_at CB969894 dihydroflavonol reductase - 8e-13 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) S.X. H.G.
0.40 57.7 1606663_at CB981710 chalcone synthase - 5e-48 At5g13930 TT4 (TRANSPARENT TESTA 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.5 95.7 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436416 V. riparia (VR, PI588259) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436395 V. riparia (VR, PI588259) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM147676 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 5
2.5 91.9 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 5e-132 470 1610206_at CF511227 hypothetical protein LOC100241377 - 2e-29 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.04 8e-14 77 1613113_at CK136925.1 phenylalanine ammonia-lyase - 1e+0 At1g57850 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.03 6e-2 38 1619791_at CB968638 - - 2e+1 At5g15750 RNA-binding S4 domain-containing protein C.G. S.X.
0.01 3e-1 36 1608376_at CF373831 similar to ribosomal protein S17 - 3e-29 At1g48350 ribosomal protein L18 family protein C.G. S.X.
0.01 3e-1 36 1607680_at CD801083 hypothetical protein LOC100253490 - 2e-12 At1g01225 NC domain-containing protein-related C.G. S.X.
0.02 4e+0 32 1621042_at CB982490 hypothetical protein LOC100253543 - 1e+0 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
0.01 4e+0 32 1620593_at BQ797219 hypothetical protein LOC100252659 - 1e-97 At1g30580 GTP binding C.G. S.X.
0.01 4e+0 32 1619847_at CF514271 hypothetical protein LOC100261336 - 1e+0 At3g22780 TSO1 (CHINESE FOR 'UGLY') C.G. S.X.
0.01 4e+0 32 1619267_at CB977052 hypothetical protein LOC100267479 - 1e-46 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-28 127 Arabidopsis thaliana At3g10340 820196 PAL4 (Phenylalanine ammonia-lyase 4) F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA - - - C.G. S.X.
0.50 1e-77 291 Glycine max Gma.2266.1.S1_s_at BG839284 - - 2e-48 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.18 5e-16 85 Hordeum vulgare Contig1805_s_at Contig1805 - - 9e-10 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.14 7e-9 63 Oryza sativa Os02g0627100 AK068993.1 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.43 2e-95 351 Populus trichocarpa Ptp.3185.1.S1_x_at AF480620.1 phenylalanine amonnia lyase - 2e-33 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.16 1e-24 115 Triticum aestivum TaAffx.45277.1.S1_x_at BJ231180 - - 1e-14 At3g53260 PAL2 C.G. S.X.
0.09 7e-9 61 Zea mays Zm.15903.3.A1_at AY104679.1 hypothetical protein LOC100273579 - 4e-12 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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