Gene omics information

Query gene ID	1619614_at
Gene name	hypothetical protein LOC100249831
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	91.0	1619614_at	CF372273	hypothetical protein LOC100249831	-	2e-36	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	S.X.	H.G.	Please select
0.72	89.7	1613022_s_at	CF569215.1	hypothetical protein LOC100261985	-	3e+0	At5g28310	oxidoreductase-related	S.X.	H.G.	Please select
0.63	84.3	1606646_at	CA812296	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	S.X.	H.G.	Please select
0.56	79.4	1622512_at	CF208965	hypothetical protein LOC100260682	-	4e-27	At4g38430	ROPGEF1	S.X.	H.G.	Please select
0.46	66.5	1614933_at	CB003963	hypothetical protein LOC100252359	-	1e+0	At2g32450	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.46	66.5	1615577_at	CB340193	hypothetical protein LOC100256811	-	4e-92	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	S.X.	H.G.	Please select
0.40	57.7	1620765_at	CF215290	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	S.X.	H.G.	Please select
0.40	57.7	1619440_at	CB971034	hypothetical protein LOC100266222	-	3e-27	At1g68060	ATMAP70-1 (microtubule-associated proteins 70-1)	S.X.	H.G.	Please select
0.35	48.5	1606777_s_at	AF378125.1	GAI1	-	8e-11	At2g01570	RGA1 (REPRESSOR OF GA1-3 1)	S.X.	H.G.	Please select
0.33	45.7	1612522_at	CF403281	hypothetical protein LOC100259324	-	7e-74	At5g10840	endomembrane protein 70, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-10	65	1607816_at	CF216068	hypothetical protein LOC100248686	-	1e-28	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	C.G.	S.X.	Please select
0.04	2e-6	52	1608103_at	CD801640	hypothetical protein LOC100266523	-	3e-61	At2g47060	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.03	1e-4	46	1609753_at	CB978481	hypothetical protein LOC100240962	-	1e-29	At1g67720	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.04	7e-3	40	1611562_at	CF211645	hypothetical protein LOC100247008	-	2e-1	At4g03390	SRF3 (STRUBBELIG-RECEPTOR FAMILY 3)	C.G.	S.X.	Please select
0.03	4e-1	34	1617277_at	BQ792301	hypothetical protein LOC100251163	-	1e+0	At3g62870	60S ribosomal protein L7A (RPL7aB)	C.G.	S.X.	Please select
0.02	4e-1	34	1615460_at	CF405945	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.04	4e-1	34	1615495_at	CB978751	hypothetical protein LOC100246196	-	2e-5	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	4e-1	34	1610530_at	CB971103	hypothetical protein LOC100243696	-	7e-34	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1622559_at	CF606481	hypothetical LOC100244512	-	9e-22	At1g42990	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-36	153	Arabidopsis thaliana	At3g14350	820655	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cytosol, nucleus, plasma membrane;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	1e-75	284	Glycine max	Gma.8678.1.S1_at	BE823227	-	-	9e-37	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	C.G.	S.X.	Please select
0.14	1e-2	40	Hordeum vulgare	Contig15403_at	Contig15403	-	-	6e-7	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	C.G.	S.X.	Please select
0.12	4e-27	123	Oryza sativa	Os03g0183800	AK100621.1	-	-	9e-8	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.52	3e-113	408	Populus trichocarpa	Ptp.2221.1.A1_at	CV231780	hypothetical protein	-	9e-40	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	5e-13	75	Triticum aestivum	Ta.29363.1.S1_at	BJ263473	-	-	2e-6	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.40	2e-38	159	Zea mays	Zm.11939.1.A1_at	CF624620	-	-	7e-21	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage