Gene omics information

Query gene ID	1619551_at
Gene name	hypothetical protein LOC100260697
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1619551_at	CF208204	hypothetical protein LOC100260697	-	9e-12	At4g08520	clathrin adaptor complex small chain family protein	S.X.	H.G.	Please select
0.67	87.9	1609947_at	BQ798098	hypothetical protein LOC100262722	-	6e-22	At2g25310	carbohydrate binding	S.X.	H.G.	Please select
0.67	87.9	1618248_at	CF514874	hypothetical protein LOC100250810	-	1e-19	At5g20180	ribosomal protein L36 family protein	S.X.	H.G.	Please select
0.53	75.2	1611204_s_at	CA816223	hypothetical protein LOC100251977	-	1e-32	At2g29960	CYP5 (CYCLOPHILIN 5)	S.X.	H.G.	Please select
0.46	66.5	1612305_at	BQ797467	hypothetical protein LOC100263408	-	2e-12	At3g15660	GRX4 (GLUTAREDOXIN 4)	S.X.	H.G.	Please select
0.43	61.5	1614753_at	CF415333	hypothetical protein LOC100241307	-	2e-4	At2g43090	aconitase C-terminal domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	8e-71	266	1620068_at	CB346239	hypothetical protein LOC100260064	-	5e-47	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.02	1e-1	36	1612479_at	CF415448	hypothetical protein LOC100243093	-	1e-8	At1g01610	GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4)	C.G.	S.X.	Please select
0.02	6e-1	34	1619413_at	CB344818	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	6e-1	34	1607822_at	CB345091	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	6e-1	34	1606923_s_at	CB344818	hypothetical protein LOC100255239	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1622521_at	BQ795423	-	-	5e-15	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1622348_s_at	CB342797	hypothetical protein LOC100248623	-	1e-34	At1g78630	emb1473 (embryo defective 1473)	C.G.	S.X.	Please select
0.02	2e+0	32	1622256_at	CD715817	-	-	1e+0	At1g04180	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618462_at	CD715817	-	-	1e+0	At1g04180	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	9e-12	71	Arabidopsis thaliana	At4g08520	826411	clathrin adaptor complex small chain family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, plasma membrane;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.40	4e-73	276	Glycine max	Gma.2138.1.S1_at	AB040543.1	nonclathrin coat protein zeta2-COP	-	3e-2	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.29	5e-21	101	Hordeum vulgare	Contig9541_at	Contig9541	-	-	4e-4	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.14	2e-5	52	Oryza sativa	Os02g0317400	AK061254.1	-	Clathrin adaptor complex, small chain familyprotein	5e-4	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	6e-63	242	Populus trichocarpa	Ptp.1390.1.S1_at	CV230875	hypothetical protein	-	7e-25	At1g60970	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	2e-12	73	Triticum aestivum	Ta.7616.1.S1_s_at	CK156631	-	-	2e+0	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	C.G.	S.X.	Please select
0.25	2e-11	69	Zea mays	Zm.232.1.A1_at	AB040667.1	nonclathrin coat protein zeta2-COP	-	6e-10	At3g09800	protein binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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