CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619517_at

Gene name O-methyltransferase

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1619517_at CF202125.1 O-methyltransferase - 4e-1 At4g09000 14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1) S.X. H.G.
0.91 98.8 1607039_at CF205573.1 - - 2e+0 At1g32975 unknown protein S.X. H.G.
0.91 98.8 1614738_at CF207056.1 - - 5e-1 At2g29470 ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3) S.X. H.G.
0.91 98.8 1622652_at CD004838 - - 9e-1 At5g53070 ribosomal protein L9 family protein S.X. H.G.
0.83 94.6 1610509_at CF202486.1 - - 5e+0 Atcg00140 - S.X. H.G.
0.59 80.6 1607438_at CF205386.1 - - 6e+0 At5g64040 PSAN S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.0 100.0 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
22.4 100.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
19.6 99.9 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
10.8 99.7 GSM147715 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 44
10.6 99.7 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
9.5 99.6 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
9.5 99.6 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
9.2 99.5 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
8.3 99.4 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
7.4 99.2 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-17 87 1611711_at CF211612 hypothetical protein LOC100251741 - 2e+0 At5g14330 unknown protein C.G. S.X.
0.21 5e-7 54 1621151_at CB971601 hypothetical protein LOC100260643 - 3e-1 At3g07260 forkhead-associated domain-containing protein / FHA domain-containing protein C.G. S.X.
0.07 5e-7 54 1620469_at CF209780 - - 4e-3 At1g21120 O-methyltransferase, putative C.G. S.X.
0.01 5e-1 34 1620315_at CF604880 - - 3e-6 At2g36480 zinc finger (C2H2-type) family protein C.G. S.X.
0.02 5e-1 34 1612489_at CD717610 - - 9e-2 At4g17230 SCL13 (Scarecrow-like 13) C.G. S.X.
0.02 5e-1 34 1608709_at CD717610 hypothetical protein LOC100267399 - 9e-2 At4g17230 SCL13 (Scarecrow-like 13) C.G. S.X.
0.01 5e-1 34 1607696_at CB009443 - - 3e-6 At2g36480 zinc finger (C2H2-type) family protein C.G. S.X.
0.04 2e+0 32 1620906_s_at CB972641 hypothetical protein LOC100246670 - 2e+0 At1g32630 unknown protein C.G. S.X.
0.02 2e+0 32 1611755_at CB918301 hypothetical protein LOC100246670 - 4e-27 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Arabidopsis thaliana At4g09000 826479 14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1) Encodes a 14-3-3 gene, designated GRF1 chi (for general regulatory factor1-G-box factor 14-3-3 homolog isoform chi). The major native forms of 14-3-3s are homo- and hetero-dimers, the biological functions of which are to interact physically with specific client proteins and thereby effect a change in the client. As a result, 14-3-3s are involved in a vast array of processes such as the response to stress, cell-cycle control, and apoptosis, serving as adapters, activators, and repressors. There are currently 133 full-length sequences available. - - - C.G. S.X.
0.09 1e-7 57 Glycine max GmaAffx.27888.1.A1_at BI967168 - - 5e-2 At2g18870 VEL3 (VERNALIZATION5/VIN3-LIKE) C.G. S.X.
0.04 7e-1 34 Hordeum vulgare HV_CEa0011G08r2_x_at HV_CEa0011G08r2 - - 1e+0 At3g25265 LCR4 (Low-molecular-weight cysteine-rich 4) C.G. S.X.
0.06 5e-2 40 Oryza sativa Os12g0445300 9640.m02475 - O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) 3e+0 At5g09650 AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6) C.G. S.X.
0.21 6e-7 56 Populus trichocarpa PtpAffx.54766.1.A1_at DN488662 flavonoid o-methyltransferase related - 3e-1 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.04 2e-3 44 Triticum aestivum TaAffx.111873.1.S1_at CA635144 - - 1e+0 At2g45650 AGL6 (AGAMOUS-LIKE 6) C.G. S.X.
0.06 4e-5 48 Zea mays Zm.2681.1.A1_at BM073609 - - 5e+0 At5g42990 UBC18 (ubiquitin-conjugating enzyme 18) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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