Gene omics information

Query gene ID	1619471_at
Gene name	hypothetical protein LOC100243217
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	S.X.	H.G.	Please select
0.67	87.9	1606813_s_at	CF211962	hypothetical protein LOC100245986	-	9e-77	At5g47200	ATRAB1A	S.X.	H.G.	Please select
0.55	77.3	1618227_at	CB981519	hypothetical protein LOC100256050	-	4e-20	At1g73570	suppressor of lin-12-like protein-related / sel-1 protein-related	S.X.	H.G.	Please select
0.50	72.7	1616331_at	CF212969	hypothetical protein LOC100261989	-	6e-25	At3g08890	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1613490_at	BQ800479	hypothetical protein LOC100241970	-	7e-22	At4g39220	ATRER1A	S.X.	H.G.	Please select
0.50	72.7	1607294_at	CB347461	hypothetical protein LOC100246786	-	4e-112	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.0	88.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.8	86.0	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.8	86.0	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	4e-159	559	1617354_at	CA816074	hypothetical protein LOC100263639	-	6e-121	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.41	1e-75	282	1620541_at	CF212449	hypothetical protein LOC100257177	-	5e-75	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.34	1e-57	222	1622781_a_at	CF214778	hypothetical protein LOC100252992	-	1e-46	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	C.G.	S.X.	Please select
0.04	1e-5	50	1616648_at	CF517228	hypothetical protein LOC100254021	-	1e-78	At3g11730	ATFP8	C.G.	S.X.	Please select
0.03	4e-5	48	1619982_at	CD798980	hypothetical protein LOC100246310	-	4e-140	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	C.G.	S.X.	Please select
0.02	6e-1	34	1620765_at	CF215290	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	C.G.	S.X.	Please select
0.02	6e-1	34	1615789_at	BQ795769	-	-	1e-3	At1g26250	proline-rich extensin, putative	C.G.	S.X.	Please select
0.02	6e-1	34	1613916_at	CF404702	hypothetical protein LOC100250922	-	1e-24	At5g64410	OPT4 (OLIGOPEPTIDE TRANSPORTER 4)	C.G.	S.X.	Please select
0.02	2e+0	32	1621911_at	CF214080	hypothetical protein LOC100252396	-	3e-64	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	1e-112	406	Arabidopsis thaliana	At3g46060	823749	ATRAB8A	small GTP-binding protein (ara-3)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.55	5e-128	458	Glycine max	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.43	2e-78	291	Hordeum vulgare	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.40	8e-57	222	Oryza sativa	Os03g0819900	AY576526.1	-	Ethylene-responsive small GTP-binding protein	4e-82	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.56	3e-142	506	Populus trichocarpa	Ptp.2072.2.S1_s_at	CA931719	hypothetical protein	-	6e-83	At3g46060	ATRAB8A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	8e-74	278	Triticum aestivum	Ta.6968.1.S1_at	CK196001	-	-	1e-45	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.34	5e-61	234	Zea mays	Zm.6039.1.A1_at	BG837895	-	-	9e-65	At5g03520	ATRAB8C	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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