Gene omics information

Query gene ID	1619468_at
Gene name	pectin methylesterase PME1
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.8	1619468_at	AY043232.1	pectin methylesterase PME1	-	7e-8	At4g33220	enzyme inhibitor/ pectinesterase	S.X.	H.G.	Please select
0.75	91.3	1609870_at	CB977378	hypothetical protein LOC100259790	-	8e-56	At3g60970	ATMRP15	S.X.	H.G.	Please select
0.71	89.5	1618333_at	CD798042	hypothetical protein LOC100264835	-	4e-3	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	S.X.	H.G.	Please select
0.70	88.6	1610275_at	CB006658	hypothetical protein LOC100246410	-	1e-9	At3g21250	ATMRP6	S.X.	H.G.	Please select
0.64	84.7	1609297_at	CB914618	-	-	1e-1	At2g30560	glycine-rich protein	S.X.	H.G.	Please select
0.64	84.7	1621395_at	CD797719	hypothetical protein LOC100243587 /// hypothetical protein LOC100251575	-	6e-7	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	S.X.	H.G.	Please select
0.63	84.3	1621201_at	BQ794760	-	-	3e-1	At5g03870	glutaredoxin family protein	S.X.	H.G.	Please select
0.58	79.8	1608432_s_at	CB004591	hypothetical protein LOC100266054	-	3e-9	At3g23690	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.57	79.8	1619742_at	AF265562.1	MAD-box transcripion factor	-	2e-16	At3g58780	SHP1 (SHATTERPROOF 1)	S.X.	H.G.	Please select
0.53	75.2	1613204_at	AF501625.1	glutathione-S-transferase /// hypothetical protein LOC100249549 /// hypothetical LOC100267917	-	4e-8	At1g17180	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.9	99.8	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.2	99.7	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.3	99.6	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.0	99.6	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.3	99.6	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.1	99.5	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.1	99.4	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.0	99.3	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.0	99.3	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.4	99.2	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	5e-43	174	1622713_at	CF404968	-	-	3e+0	At4g10250	ATHSP22.0	C.G.	S.X.	Please select
0.02	7e-2	38	1622450_at	CB970586	-	-	5e-7	At2g45220	pectinesterase family protein	C.G.	S.X.	Please select
0.03	1e+0	34	1616522_at	CF403905	hypothetical protein LOC100262892	-	2e-8	At3g14310	ATPME3	C.G.	S.X.	Please select
0.02	1e+0	34	1615574_at	CB977067	hypothetical protein LOC100245304	-	7e-9	At2g45220	pectinesterase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	1611559_at	CK138184.1	-	-	4e-1	At5g46915	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.01	1e+0	34	1611400_at	CF510785	hypothetical protein LOC100266087	-	1e+0	At5g30520	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	1609428_at	CF215282	hypothetical protein LOC100257037	-	1e-14	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.01	4e+0	32	1622641_at	CB008231	hypothetical protein LOC100255988	-	3e-2	At3g49300	proline-rich family protein	C.G.	S.X.	Please select
0.01	4e+0	32	1622100_at	BM436534	hypothetical protein LOC100267831	-	5e-7	At2g46690	auxin-responsive family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-8	59	Arabidopsis thaliana	At4g33220	829458	enzyme inhibitor/ pectinesterase	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	6e-12	73	Glycine max	GmaAffx.15862.1.S1_at	BM092634	-	-	1e-39	At4g33220	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.01	7e+0	32	Hordeum vulgare	HV11C08u_x_at	HV11C08u	-	-	7e+0	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	C.G.	S.X.	Please select
0.03	3e-8	61	Oryza sativa	Os08g0450100	AK058651.1	-	Pectinesterase (EC 3.1.1.11) (Fragment)	2e-2	At1g11370	pectinesterase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	2e-21	105	Populus trichocarpa	PtpAffx.132383.1.A1_s_at	CV268088	hypothetical protein	-	1e-1	At3g43270	pectinesterase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	4e+0	34	Triticum aestivum	TaAffx.51609.1.S1_at	CA722993	-	-	5e-2	At5g56840	DNA-binding family protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zea mays	ZmAffx.1166.1.A1_at	AW585299	-	-	5e-14	At5g19780	TUA5	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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