Gene omics information

Query gene ID	1619464_at
Gene name	hypothetical protein LOC100254564
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1619464_at	CA818609	hypothetical protein LOC100254564	-	3e-11	At1g79160	unknown protein	S.X.	H.G.	Please select
0.91	98.8	1621556_s_at	CB980317	hypothetical protein LOC100246330 /// hypothetical protein LOC100266521	-	2e-4	At2g22430	ATHB6	S.X.	H.G.	Please select
0.67	87.9	1609974_at	CB977877	hypothetical protein LOC100267017	-	2e-61	At4g26610	D6PKL1 (D6 PROTEIN KINASE LIKE 1)	S.X.	H.G.	Please select
0.32	43.1	1612516_at	CB976044	hypothetical protein LOC100252647	-	8e-9	At4g39400	BRI1 (BRASSINOSTEROID INSENSITIVE 1)	S.X.	H.G.	Please select
0.19	20.9	1618184_at	BQ795140	hypothetical protein LOC100255523	-	5e-84	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.19	20.9	1619894_at	CF204831.1	hypothetical protein LOC100244643	-	2e-43	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	99.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.3	98.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	4e-20	97	1619135_s_at	CF204534.1	hypothetical protein LOC100254564	-	2e+0	At3g06230	ATMKK8	C.G.	S.X.	Please select
0.19	4e-20	97	1617859_at	CF204534.1	-	-	2e+0	At3g06230	ATMKK8	C.G.	S.X.	Please select
0.19	4e-20	97	1607869_x_at	CF204534.1	-	-	2e+0	At3g06230	ATMKK8	C.G.	S.X.	Please select
0.03	4e-2	38	1609452_at	BQ794280	hypothetical protein LOC100249768	-	3e-1	At4g31460	ribosomal protein L28 family protein	C.G.	S.X.	Please select
0.02	6e-1	34	1615353_at	CB973179	-	-	4e-12	At4g04614	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1620590_at	CB005729	-	-	6e-9	At2g05990	MOD1 (MOSAIC DEATH 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1620232_at	CD005509	-	-	1e+0	At5g67060	HEC1 (HECATE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1619101_at	CB975563	hypothetical protein LOC100248761	-	4e-13	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-11	69	Arabidopsis thaliana	At1g79160	844257	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-2	42	Glycine max	Gma.1931.1.S1_at	BG155300	-	-	9e+0	At5g58005	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HVSMEb0003G09r2_at	HVSMEb0003G09r2	-	-	2e+1	At5g02440	unknown protein	C.G.	S.X.	Please select
0.04	9e-1	36	Oryza sativa	OsAffx.23472.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	7e-1	36	Populus trichocarpa	PtpAffx.223691.1.S1_at	pmrna41823	hypothetical protein	-	1e+0	At2g36410	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	Ta.13587.1.A1_at	BQ169625	-	-	4e+0	At1g43415	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.347.1.S1_at	U82230.1	prolamin-box binding factor1	-	1e-5	At1g47655	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage