CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619424_at

Gene name hypothetical protein LOC100267695

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 91.3 1619424_at BQ800205 hypothetical protein LOC100267695 - 5e-9 At4g23550 WRKY29 S.X. H.G.
0.53 75.2 1618875_s_at CF214574 hypothetical protein LOC100266914 - 1e-1 At1g51950 IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18) S.X. H.G.
0.44 64.1 1622725_at CF513192 hypothetical protein LOC100260366 - 7e+0 At5g28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) S.X. H.G.
0.40 57.7 1616694_at CB970213 hypothetical protein LOC100250410 - 2e+0 At3g29350 AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) S.X. H.G.
0.39 54.9 1619436_at CF372293 hypothetical protein LOC100268063 - 5e-3 At5g11930 glutaredoxin family protein S.X. H.G.
0.38 53.6 1616785_at CF211839 hypothetical protein LOC100259648 - 1e-32 At4g14560 IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE) S.X. H.G.
0.35 48.5 1620022_at CF413848 - - 1e+1 At4g01995 unknown protein S.X. H.G.
0.29 37.7 1621003_at CF215626 similar to HB2 homeodomain protein - 2e-1 At5g46700 TRN2 (TORNADO 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.2 98.8 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.0 98.7 GSM436378 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.7 98.5 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.1 98.1 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436384 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-16 83 1611650_at CA808599 hypothetical protein LOC100244122 - 3e-26 At2g23320 WRKY15 C.G. S.X.
0.03 5e-6 50 1620426_at CF515986 similar to DNA-binding protein - 1e-20 At1g13960 WRKY4 C.G. S.X.
0.10 2e-5 48 1612649_s_at CA809370 hypothetical protein LOC100244122 - 1e-6 At3g04670 WRKY39 C.G. S.X.
0.04 8e-2 36 1611797_at CF208103 hypothetical protein LOC100257001 - 3e-38 At2g30060 Ran-binding protein 1b (RanBP1b) C.G. S.X.
0.03 3e-1 34 1619292_at CF404263 - - 2e-1 At1g58460 unknown protein C.G. S.X.
0.02 1e+0 32 1622154_at CD720258 - - 2e+0 At5g54850 unknown protein C.G. S.X.
0.02 1e+0 32 1621411_at CF214444 hypothetical protein LOC100266674 - 4e-1 At2g43640 signal recognition particle 14 kDa family protein / SRP14 family protein C.G. S.X.
0.02 1e+0 32 1618634_at CF211062 hypothetical protein LOC100248740 - 5e-1 At1g64355 unknown protein C.G. S.X.
0.01 1e+0 32 1615754_at CF213398 - - 3e-41 At5g65470 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-9 61 Arabidopsis thaliana At4g23550 828455 WRKY29 Encodes WRKY DNA-binding protein 29 (WRKY29). - - - C.G. S.X.
0.17 4e-7 56 Glycine max Gma.15748.1.A1_at AI900530 transcription factor - 2e-5 At5g28650 WRKY74 C.G. S.X.
0.14 8e-3 40 Hordeum vulgare Contig22226_at Contig22226 - - 6e-6 At3g04670 WRKY39 C.G. S.X.
0.08 6e-7 56 Oryza sativa Os05g0129800 9633.m00316 - DNA-binding WRKY domain containing protein 5e-10 At4g24240 WRKY7 C.G. S.X.
0.41 2e-33 143 Populus trichocarpa PtpAffx.215667.1.S1_x_at pmrna29997 hypothetical protein - 5e-3 At2g23320 WRKY15 C.G. S.X.
0.06 1e-3 44 Triticum aestivum Ta.14320.1.A1_at BU100245 WRKY16 transcription factor - 4e-8 At5g28650 WRKY74 C.G. S.X.
0.12 1e-7 56 Zea mays Zm.9098.1.A1_a_at BM336161 Hypothetical protein LOC100192894 - 6e-6 At4g31550 WRKY11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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