CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619417_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1619417_at CB002610 - - 7e-1 At5g53980 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) S.X. H.G.
0.43 61.5 1609630_at CB002524 - - 4e-14 At3g14205 phosphoinositide phosphatase family protein S.X. H.G.
0.10 10.3 1609587_at CF202068.1 - - 5e-9 At1g32220 binding / catalytic/ coenzyme binding S.X. H.G.
0.10 10.3 1621510_at CF405481 - - 9e-29 At2g13560 malate oxidoreductase, putative S.X. H.G.
0.03 4.2 1606787_at CF373239 hypothetical protein LOC100258674 - 4e-1 At1g13620 unknown protein S.X. H.G.
0.03 4.2 1612983_at CB344129 hypothetical protein LOC100249094 - 1e-1 At3g15790 MBD11 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 98.9 GSM147736 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 65
6.1 98.7 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
5.6 98.4 GSM147712 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 41
4.9 97.9 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
4.9 97.9 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
4.4 97.3 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 732 1615606_at CB002610 - - 7e-1 At5g53980 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) C.G. S.X.
0.04 1e-6 52 1618169_at CB001607 - - 6e+0 At3g09975 unknown protein C.G. S.X.
0.06 1e-6 52 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
0.06 1e-6 52 1610333_at CD711415 - - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
0.04 4e-6 50 1622134_at CB837649 - - 4e-1 At1g70920 ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18) C.G. S.X.
0.05 4e-6 50 1620522_at CA809321 hypothetical protein LOC100257595 - 5e+0 At3g04280 ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) C.G. S.X.
0.05 4e-6 50 1619346_at BQ798913 hypothetical protein LOC100255325 - 3e-4 At3g44750 HDA3 (HISTONE DEACETYLASE 3) C.G. S.X.
0.05 4e-6 50 1618171_s_at BQ792407 zeaxanthin epoxidase - 3e-1 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
0.04 4e-6 50 1614012_at CF415366 hypothetical protein LOC100254260 - 3e-1 At5g54980 integral membrane family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 34 Arabidopsis thaliana At5g53980 835481 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. - - - C.G. S.X.
0.06 1e-3 44 Glycine max GmaAffx.12286.2.S1_at BM108265 - - 1e-11 At5g38510 rhomboid family protein C.G. S.X.
0.04 6e-3 40 Hordeum vulgare Contig6933_s_at Contig6933 - - 3e-1 At3g56340 40S ribosomal protein S26 (RPS26C) C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.32307.1.A1_at - - - 0 C.G. S.X.
0.09 4e-3 42 Populus trichocarpa PtpAffx.77872.1.A1_at CK090915 - - 1e+0 Atcg01020 - C.G. S.X.
0.06 2e-4 46 Triticum aestivum TaAffx.83046.1.S1_at CA662735 - - 3e+0 At2g35658 unknown protein C.G. S.X.
0.05 5e-3 40 Zea mays Zm.15668.1.S1_at CD438122 - - 7e-1 At3g53670 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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