Gene omics information

Query gene ID	1619413_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	95.1	1619413_at	CB344818	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.56	79.4	1614427_at	CB974176	-	-	7e+0	At5g37055	SEF (SERRATED LEAVES AND EARLY FLOWERING)	S.X.	H.G.	Please select
0.47	67.7	1622712_s_at	CD801320	hypothetical protein LOC100267597	-	6e+0	At2g13272	unknown protein	S.X.	H.G.	Please select
0.35	48.5	1614492_at	CF404505	hypothetical protein LOC100260946	-	7e-22	At5g47870	unknown protein	S.X.	H.G.	Please select
0.33	45.7	1614238_at	CB982342	hypothetical protein LOC100259659	-	4e-20	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	S.X.	H.G.	Please select
0.32	43.1	1621994_at	CA811291	hypothetical protein LOC100255846	-	5e-2	At1g20990	DC1 domain-containing protein	S.X.	H.G.	Please select
0.31	41.3	1612168_at	CF208351	hypothetical protein LOC100267262	-	2e-13	At3g61560	reticulon family protein (RTNLB6)	S.X.	H.G.	Please select
0.27	34.0	1609604_at	CF513913	hypothetical protein LOC100264326	-	2e-3	At1g34780	ATAPRL4 (APR-like 4)	S.X.	H.G.	Please select
0.22	25.6	1621888_at	CD710781	hypothetical protein LOC100252475	-	4e-1	At5g39570	unknown protein	S.X.	H.G.	Please select
0.21	24.0	1618417_a_at	CB343445	hypothetical protein LOC100257590	-	7e-83	At4g35410	clathrin adaptor complex small chain family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.3	90.7	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.3	90.7	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.1	89.1	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
2.0	88.2	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.0	88.2	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27
2.0	88.2	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
1.9	87.2	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	1606	1606923_s_at	CB344818	hypothetical protein LOC100255239	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.74	0	1043	1607822_at	CB345091	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.27	3e-107	387	1620234_at	CA816993	hypothetical protein LOC100255239	-	4e+0	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.02	3e-2	38	1619303_at	CF515869	hypothetical protein LOC100245919	-	5e+0	At1g10155	ATPP2-A10 (PHLOEM PROTEIN 2-A10)	C.G.	S.X.	Please select
0.02	1e-1	36	1611180_at	BQ795485	hypothetical protein LOC100263350	-	5e+0	At3g28455	CLE25 (CLAVATA3/ESR-RELATED 25)	C.G.	S.X.	Please select
0.02	5e-1	34	1622886_at	CB348288	hypothetical protein LOC100252460	-	3e-13	At1g52540	protein kinase, putative	C.G.	S.X.	Please select
0.02	5e-1	34	1622260_at	CD012303	-	-	2e+0	At3g30460	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	5e-1	34	1619981_at	CB004603	similar to MtN19-like protein	-	8e-7	At5g61820	-	C.G.	S.X.	Please select
0.02	5e-1	34	1619551_at	CF208204	hypothetical protein LOC100260697	-	9e-12	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-6	52	Arabidopsis thaliana	At1g64850	842793	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	3e-9	63	Glycine max	GmaAffx.79444.1.S1_at	BG156754	-	-	2e+0	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	5e-2	38	Hordeum vulgare	HA27E10r_x_at	HA27E10r	-	-	3e-5	At2g39390	60S ribosomal protein L35 (RPL35B)	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os08g0366200	AK103736.1	-	Protein of unknown function DUF1313 family protein	1e-1	At3g08640	alphavirus core protein family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	2e-7	57	Populus trichocarpa	PtpAffx.1761.2.S1_at	DN484457	hypothetical protein	-	5e-2	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-1	36	Triticum aestivum	TaAffx.107156.1.S1_at	CA705156	-	-	8e-1	At2g31670	-	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.14791.1.A1_at	CF628382	ADP-ribosylation factor-like protein 8B	-	7e-9	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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