Gene omics information

Query gene ID	1619392_at
Gene name	hypothetical protein LOC100259847
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1619392_at	CF513478	hypothetical protein LOC100259847	-	4e+0	At3g24060	self-incompatibility protein-related	S.X.	H.G.	Please select
0.73	90.8	1610777_at	CD797701	hypothetical protein LOC100263956	-	2e-42	At3g13670	protein kinase family protein	S.X.	H.G.	Please select
0.67	87.9	AFFX-Vvi-actin-5_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.57	79.8	1614838_at	CB977099	hypothetical protein LOC100244335	-	1e-4	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.53	75.2	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	S.X.	H.G.	Please select
0.53	75.2	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	S.X.	H.G.	Please select
0.44	64.1	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1616993_at	CB349511	-	-	7e-3	At1g23465	signal peptidase-related	C.G.	S.X.	Please select
0.01	1e+0	32	1619225_s_at	CA809011	hypothetical protein LOC100251979	-	5e-55	At3g44110	ATJ3	C.G.	S.X.	Please select
0.02	5e+0	30	1620548_at	CB339904	-	-	4e-1	At2g41780	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1617441_at	CF074656	hypothetical protein LOC100246691	-	1e-13	At3g51850	CPK13	C.G.	S.X.	Please select
0.03	5e+0	30	1617394_at	CD718331	-	-	1e+0	At3g46090	ZAT7	C.G.	S.X.	Please select
0.04	5e+0	30	1617038_at	CA814579	-	-	2e+0	At5g02050	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1616942_at	CF200938.1	-	-	9e-2	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	C.G.	S.X.	Please select
0.02	5e+0	30	1615815_at	CF207323	similar to ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	-	5e-23	At3g49290	ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.03	5e+0	30	1613566_at	CD718331	-	-	1e+0	At3g46090	ZAT7	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g24060	821991	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-7	57	Glycine max	Gma.135.1.S1_at	AJ006308.1	tyrosine phosphatase 1	-	3e-34	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HD01I01w_at	HD01I01w	-	-	3e+0	At3g56950	SIP2	C.G.	S.X.	Please select
0.02	5e-1	36	Oryza sativa	Os05g0362300	AK101894.1	-	Protein of unknown function DUF538 family protein	1e-1	At4g02360	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-3	44	Populus trichocarpa	PtpAffx.212395.1.S1_at	pmrna24285	-	-	3e-13	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	Ta.10934.1.A1_at	BQ166848	-	-	3e+0	At5g59050	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	32	Zea mays	Zm.17542.1.A1_at	CK369401	receptor-type tyrosine-protein phosphatase S	-	3e+0	At2g34720	NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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