Gene omics information

Query gene ID	1619335_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1619335_at	CB005450	-	-	2e+0	At4g09775	-	S.X.	H.G.	Please select
0.41	58.7	1613291_at	CF972323.1	-	-	4e-4	At3g13410	unknown protein	S.X.	H.G.	Please select
0.39	54.9	1612508_at	CB914120	-	-	9e-5	At1g70330	ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1)	S.X.	H.G.	Please select
0.36	50.7	1617607_at	CB918932	-	-	3e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	S.X.	H.G.	Please select
0.33	45.7	1617721_at	CF568847	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	S.X.	H.G.	Please select
0.32	43.1	1611372_at	CD711835	-	-	9e-61	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	S.X.	H.G.	Please select
0.31	41.3	1621365_at	CK136934.1	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.31	41.3	1617143_at	CD006508	-	-	3e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	S.X.	H.G.	Please select
0.30	39.4	1611659_at	CD712700	-	-	6e-40	At1g21650	ATP binding / protein binding	S.X.	H.G.	Please select
0.24	28.7	1616784_at	CD007778	-	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.8	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
8.5	99.4	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
7.1	99.1	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.8	98.6	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.6	98.4	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
3.2	94.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2078	1606672_at	CB005450	-	-	2e+0	At4g09775	-	C.G.	S.X.	Please select
0.02	2e-1	36	1615867_at	CF513408	-	-	7e-5	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.02	2e-1	36	1614871_s_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.02	2e-1	36	1612201_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.02	6e-1	34	1618887_at	CB342900	-	-	2e-12	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select
0.02	6e-1	34	1618842_at	CF514693	similar to TIP1 (TIP GROWTH DEFECTIVE 1)	-	4e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	C.G.	S.X.	Please select
0.01	6e-1	34	1615691_at	CF511397	hypothetical protein LOC100251732	-	9e-56	At4g03430	EMB2770 (EMBRYO DEFECTIVE 2770)	C.G.	S.X.	Please select
0.02	6e-1	34	1612843_at	CF510735	-	-	5e+0	At4g20030	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	6e-1	34	1607469_at	CB977637	hypothetical protein LOC100261135	-	2e-10	At3g17980	C2 domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g09775	826566	-	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.88671.1.A1_at	CD417004	-	-	7e-1	At4g16000	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	Contig25005_at	Contig25005	-	-	4e+0	At2g28480	RNA binding	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os.16777.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	6e-17	89	Populus trichocarpa	PtpAffx.44845.1.S1_at	CV237207	-	-	6e-1	At2g03310	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-1	38	Triticum aestivum	Ta.15732.1.A1_at	CA486587	-	-	3e-1	At1g34270	exostosin family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.12629.1.S1_at	BU079978	double-strand break repair protein MRE11	-	6e-2	At4g19100	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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