Gene omics information

Query gene ID	1619327_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	95.2	1619327_at	CD004606	-	-	2e+0	At5g08050	-	S.X.	H.G.	Please select
0.61	83.2	1610129_at	CD718985	-	-	2e-2	At5g10000	ATFD4 (ferredoxin 4)	S.X.	H.G.	Please select
0.60	81.9	1611600_at	CD719533	-	-	8e-18	At3g57000	nucleolar essential protein-related	S.X.	H.G.	Please select
0.52	73.9	1622835_at	CB919289	-	-	2e-5	At5g19000	ATBPM1 (BTB-POZ and MATH domain 1)	S.X.	H.G.	Please select
0.47	67.7	1613219_at	CF568857	-	-	4e-74	At5g28850	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.46	66.5	1612775_at	CK138199.1	-	-	8e-27	At2g36530	LOS2	S.X.	H.G.	Please select
0.46	66.5	1621883_at	CK136961.1	-	-	2e+1	At5g02780	In2-1 protein, putative	S.X.	H.G.	Please select
0.42	60.1	1620697_at	CF568836	-	-	1e+0	At3g13857	unknown protein	S.X.	H.G.	Please select
0.39	54.9	1607436_at	CF568907	-	-	5e-24	At3g60820	PBF1	S.X.	H.G.	Please select
0.34	46.8	1621365_at	CK136934.1	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	99.4	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
7.1	99.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.3	98.2	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.2	98.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1733	1606661_at	CD004606	hypothetical protein LOC100246447	-	2e+0	At5g08050	-	C.G.	S.X.	Please select
0.04	5e-4	44	1616472_at	CF405517	hypothetical protein LOC100260255	-	1e+0	At5g36140	CYP716A2	C.G.	S.X.	Please select
0.02	3e-2	38	1610497_s_at	BQ794436	hypothetical protein LOC100243420	-	1e-50	At3g04920	40S ribosomal protein S24 (RPS24A)	C.G.	S.X.	Please select
0.02	5e-1	34	1611175_at	CF203707.1	-	-	2e-3	At3g48300	CYP71A23	C.G.	S.X.	Please select
0.02	2e+0	32	1620957_at	CB969381	hypothetical protein LOC100244062	-	8e-21	At2g43400	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	C.G.	S.X.	Please select
0.02	2e+0	32	1619875_at	CF206348.1	-	-	2e-9	At3g22460	OASA2 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.02	2e+0	32	1619374_at	CD010366	-	-	5e+0	At5g42790	PAF1	C.G.	S.X.	Please select
0.02	2e+0	32	1618916_at	CA808970	hypothetical protein LOC100257295	-	3e-4	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.02	2e+0	32	1615561_at	CD010366	-	-	5e+0	At5g42790	PAF1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g08050	830699	-	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-2	40	Glycine max	GmaAffx.35154.1.A1_at	BU549991	-	-	3e-1	At5g15570	-	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	EBro08_SQ006_M09_at	EBro08_SQ006_M09	-	-	2e-2	At4g10040	CYTC-2 (cytochrome c-2)	C.G.	S.X.	Please select
0.03	4e+0	34	Oryza sativa	Os.48531.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-14	81	Populus trichocarpa	PtpAffx.214002.1.S1_at	pmrna27277	hypothetical protein	-	2e-1	At3g02160	DNA binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.17954.1.S1_at	CA626439	-	-	5e-1	At1g75300	isoflavone reductase, putative	C.G.	S.X.	Please select
0.03	5e-2	38	Zea mays	Zm.11921.1.A1_at	BM381857	hypothetical protein LOC100273374	-	3e-1	At4g31840	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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