CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619303_at

Gene name hypothetical protein LOC100245919

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1619303_at CF515869 hypothetical protein LOC100245919 - 5e+0 At1g10155 ATPP2-A10 (PHLOEM PROTEIN 2-A10) S.X. H.G.
0.44 64.1 1618631_at CB343260 hypothetical protein LOC100240978 - 2e+1 At5g58790 unknown protein S.X. H.G.
0.33 45.7 1622425_at CB971457 similar to TIP1 (TIP GROWTH DEFECTIVE 1) - 2e-5 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) S.X. H.G.
0.22 25.6 1621811_at CB341999 SINA2p - 5e-48 At3g58040 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) S.X. H.G.
0.15 15.6 1615568_s_at CF415266 hypothetical protein LOC100242512 - 2e-2 At3g04470 - S.X. H.G.
0.06 6.8 1606984_at CB919078 hypothetical protein LOC100251815 - 8e-34 At5g49720 ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 95.2 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 38 1619413_at CB344818 - - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.03 3e-2 38 1607822_at CB345091 - - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.02 3e-2 38 1606923_s_at CB344818 hypothetical protein LOC100255239 - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.02 2e+0 32 1614291_at CD007866 - - 1e+0 At4g38401 unknown protein C.G. S.X.
0.02 2e+0 32 1612702_at CF512184 - - 3e-2 At5g39860 PRE1 (PACLOBUTRAZOL RESISTANCE1) C.G. S.X.
0.02 2e+0 32 1610519_at CD007866 - - 1e+0 At4g38401 unknown protein C.G. S.X.
0.02 2e+0 32 1608926_at CF512184 - - 3e-2 At5g39860 PRE1 (PACLOBUTRAZOL RESISTANCE1) C.G. S.X.
0.02 6e+0 30 1622683_at CA818631 hypothetical protein LOC100244354 - 3e-1 At3g32920 ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.02 6e+0 30 1620616_at CA808066 - - 1e+0 At5g09230 SRT2 (SIRTUIN 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Arabidopsis thaliana At1g10155 837553 ATPP2-A10 (PHLOEM PROTEIN 2-A10) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.19767.1.A1_at BU545940 - - 1e+0 At5g14900 helicase associated (HA2) domain-containing protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare EBro08_SQ010_D12_at EBro08_SQ010_D12 - - 2e-1 At5g03550 - C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.665.1.S1_at - - - 0 C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.224196.1.S1_x_at pmrna42512 glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 - 3e-1 At3g26420 ATRZ-1A C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.17172.1.S1_at CA618473 - - 3e+0 At1g54775 - C.G. S.X.
0.03 9e+0 30 Zea mays Zm.6234.2.A1_at AI881460 - - 8e-7 At2g30110 ATUBA1 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage