Gene omics information

Query gene ID	1619289_at
Gene name	hypothetical protein LOC100242328
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1619289_at	CB340785	hypothetical protein LOC100242328	-	1e+0	At4g16265	NRPB9B	S.X.	H.G.	Please select
0.50	72.7	1609761_a_at	CD800010	hypothetical protein LOC100262783	-	3e-7	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	S.X.	H.G.	Please select
0.44	64.1	1613930_at	CF213897	hypothetical protein LOC100259771	-	4e-85	At5g21070	unknown protein	S.X.	H.G.	Please select
0.35	48.5	1618681_at	BQ797518	hypothetical protein LOC100241923	-	1e-30	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	S.X.	H.G.	Please select
0.35	48.5	1617194_at	BQ794485	hypothetical protein LOC100264514	-	5e-1	At5g37520	unknown protein	S.X.	H.G.	Please select
0.22	25.6	1607364_at	CB975561	-	-	4e+0	At1g77930	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	91.3	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.0	88.2	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	1622646_at	CD715208	-	-	1e+0	At2g16710	hesB-like domain-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	1609964_at	CD715208	-	-	1e+0	At2g16710	hesB-like domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	1620983_at	CF207286	hypothetical protein LOC100267272	-	3e-10	At5g01320	pyruvate decarboxylase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1618811_at	CA817290	hypothetical protein LOC100243112	-	3e-11	At1g11240	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1618057_at	CF207962	hypothetical protein LOC100265221	-	4e+0	At5g49410	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616793_at	CD720210	-	-	1e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1615583_at	CD800165	-	-	2e-1	At1g71340	glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1612963_at	CD720210	-	-	1e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1612375_s_at	CD800165	hypothetical protein LOC100251767	-	2e-1	At1g71340	glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g16265	827321	NRPB9B	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.21338.1.A1_at	BE823608	-	-	3e+0	Atmg00590	-	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEk0017G07r2_at	HVSMEk0017G07r2	-	-	1e+0	At5g28770	BZO2H3	C.G.	S.X.	Please select
0.06	1e-11	71	Oryza sativa	Os03g0648900	AK060491.1	-	-	3e-3	At2g38680	5'-nucleotidase/ magnesium ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	7e-34	145	Populus trichocarpa	PtpAffx.37292.1.A1_at	CV257510	hypothetical protein	-	9e-2	At2g38680	5'-nucleotidase/ magnesium ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.112663.1.S1_at	CA622099	-	-	2e+1	At3g61560	reticulon family protein (RTNLB6)	C.G.	S.X.	Please select
0.07	7e-16	83	Zea mays	Zm.18433.1.S1_at	CO528669	cytosolic 5-nucleotidase III	-	4e-5	At2g38680	5'-nucleotidase/ magnesium ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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