CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619248_at

Gene name hypothetical protein LOC100264750

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1619248_at CA813733 hypothetical protein LOC100264750 - 3e-1 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) S.X. H.G.
0.67 87.9 1611442_s_at CF207003.1 similar to ubiquitin-associated protein - 4e-2 At1g13635 methyladenine glycosylase family protein S.X. H.G.
0.53 75.2 1621094_s_at CF214762 similar to AT4g27960 - 1e-72 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) S.X. H.G.
0.50 72.7 1613738_at CB343644 hypothetical protein LOC100265879 - 6e-1 At3g25420 scpl21 (serine carboxypeptidase-like 21) S.X. H.G.
0.44 64.1 1611958_at BQ800100 hypothetical protein LOC100265795 - 8e-18 At5g66930 unknown protein S.X. H.G.
0.33 45.7 1613129_at CB970410 hypothetical protein LOC100266068 - 2e-13 At4g17330 ATG2484-1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 96.4 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-2 36 1620646_at CF405313 hypothetical protein LOC100267710 - 1e-3 At2g18465 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 8e-2 36 1606479_at CF516469 hypothetical protein LOC100249597 - 6e+0 At5g47650 ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) C.G. S.X.
0.02 3e-1 34 1612943_at CB346200 hypothetical protein LOC100250133 - 5e-1 At4g30480 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.03 3e-1 34 1611001_at CF204537.1 - - 7e-12 At2g26600 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 1e+0 32 1620306_at CF404552 hypothetical protein LOC100267760 - 3e-36 At1g75450 CKX5 (CYTOKININ OXIDASE 5) C.G. S.X.
0.02 1e+0 32 1611700_at CF215728 hypothetical protein LOC100254168 - 2e-9 At3g59650 mitochondrial ribosomal protein L51/S25/CI-B8 family protein C.G. S.X.
0.03 1e+0 32 1610796_at CB006117 hypothetical protein LOC100243772 - 2e-18 At1g53570 MAP3KA C.G. S.X.
0.01 5e+0 30 1621563_x_at AF239740.1 similar to caffeic acid O-methyltransferase - 1e-39 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.03 5e+0 30 1621540_at CB973791 hypothetical protein LOC100265913 - 2e-33 At5g53480 importin beta-2, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Arabidopsis thaliana At5g18100 831928 CSD3 (copper/zinc superoxide dismutase 3) A putative peroxisomal CuZnSOD inducible by a high-light pulse. - - - C.G. S.X.
0.37 1e-41 171 Glycine max GmaAffx.772.1.S1_at BE821626 - - 1e-2 At1g56290 CwfJ-like family protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare EBma03_SQ002_D19_at EBma03_SQ002_D19 - - 1e+0 At5g57391 unknown protein C.G. S.X.
0.04 5e-1 36 Oryza sativa Os05g0160000 AK063865.1 - Dihydrolipoyl dehydrogenase, mitochondrialprecursor (EC 1.8.1.4) (Glycine cleavage system Lprotein) (Dihydrolipoamide dehydrogenase) 3e-12 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) C.G. S.X.
0.37 9e-36 151 Populus trichocarpa PtpAffx.77572.1.S1_at CK104432 hypothetical protein - 4e-1 At3g49307 Expressed protein C.G. S.X.
0.06 2e-2 40 Triticum aestivum Ta.22058.2.S1_at BJ276634 - - 1e+0 At2g24395 chaperone protein dnaJ-related C.G. S.X.
0.08 3e-2 38 Zea mays Zm.14784.1.A1_at BG841481 - - 3e+0 At3g01175 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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