Gene omics information

Query gene ID	1619210_at
Gene name	Cu/Zn superoxide dismutase-like
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	79.4	1619210_at	AF056622.1	Cu/Zn superoxide dismutase-like	-	9e-46	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	S.X.	H.G.	Please select
0.60	81.9	1608014_at	CF512552	hypothetical protein LOC100249623	-	7e-14	At1g78955	CAMS1 (Camelliol C synthase 1)	S.X.	H.G.	Please select
0.56	79.4	1609526_at	CF210472	hypothetical protein LOC100261349	-	2e+0	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	S.X.	H.G.	Please select
0.04	5.2	1621822_at	CF516639	hypothetical protein LOC100263358	-	6e-7	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	S.X.	H.G.	Please select
0.03	4.2	1606951_at	CF513249	hypothetical protein LOC100257242	-	1e+0	At5g19450	CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19)	S.X.	H.G.	Please select
0.02	3.2	1606536_at	CB971452	hypothetical protein LOC100249578	-	1e+0	At2g43720	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	99.6	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.9	99.3	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.8	99.3	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.1	99.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.3	97.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.2	97.1	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-5	50	1616657_at	CB982498	hypothetical protein LOC100241809	-	9e-36	At1g08830	CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please select
0.02	6e-1	34	1607134_at	BQ794051	hypothetical protein LOC100243531	-	2e+0	At3g51100	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1622660_at	CF516479	hypothetical protein LOC100266599	-	2e-68	At4g04770	ATABC1 (ATP BINDING CASSETTE PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1621657_at	CB003199	hypothetical protein LOC100258324	-	1e+0	At1g21080	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	32	1619223_s_at	CB005867	hypothetical protein LOC100249279	-	3e-41	At3g43190	SUS4	C.G.	S.X.	Please select
0.02	2e+0	32	1615573_a_at	CF214242	-	-	2e-5	At1g08580	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1615275_at	BQ797243	hypothetical protein LOC100241984	-	3e+0	At4g02733	-	C.G.	S.X.	Please select
0.02	2e+0	32	1615112_at	CB003966	-	-	3e-39	At1g64355	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614955_at	CB036041	-	-	1e+0	At2g39520	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	9e-46	184	Arabidopsis thaliana	At2g28190	817365	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	9e-96	351	Glycine max	Gma.6384.1.S1_at	BI968043	-	-	5e-51	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select
0.32	5e-64	244	Hordeum vulgare	Contig3197_at	Contig3197	-	-	1e-50	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select
0.24	1e-33	145	Oryza sativa	Os08g0561700	D85239.1	-	Superoxide dismutase [Cu-Zn], chloroplastprecursor (EC 1.15.1.1)	2e-43	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	1e-70	268	Populus trichocarpa	PtpAffx.131228.1.S1_at	BU866158	hypothetical protein	-	9e-46	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	4e-51	202	Triticum aestivum	Ta.166.1.S1_a_at	U69632.1	Cu/Zn superoxide dismutase	-	1e-31	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select
0.26	9e-44	176	Zea mays	Zm.9031.1.S1_at	CD441372	chloroplast Cu-Zn superoxide dismutase	-	8e-37	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage