Gene omics information

Query gene ID	1619209_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1619209_at	CA817415	-	-	2e+0	At1g76680	OPR1	S.X.	H.G.	Please select
0.92	99.0	1612624_at	CB974055	similar to Os06g0598500	-	0	Atcg00540	-	S.X.	H.G.	Please select
0.83	94.6	1622744_at	CF201679.1	similar to Os01g0789500 /// similar to ribosomal protein S3	-	2e-42	Atcg00820	-	S.X.	H.G.	Please select
0.80	93.6	1613911_s_at	CF201679.1	similar to Os01g0789500 /// similar to ribosomal protein S3	-	2e-42	Atcg00820	-	S.X.	H.G.	Please select
0.73	90.8	1609479_s_at	CF204138.1	-	-	1e+0	At3g10590	myb family transcription factor	S.X.	H.G.	Please select
0.63	84.3	1617605_at	CF513977	-	-	0	Atcg00680	-	S.X.	H.G.	Please select
0.53	75.2	1618379_s_at	CB343512	-	-	1e+0	At3g49115	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.4	99.9	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
12.4	99.8	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
11.1	99.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
11.0	99.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
9.7	99.6	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
9.2	99.5	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
8.5	99.4	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
7.9	99.3	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
7.3	99.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
6.6	98.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	0	694	1614676_s_at	BQ793152	ATP synthase subunit a, chloroplastic	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.09	0	694	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.09	0	694	1608138_s_at	CB342671	-	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.37	3e-95	347	1617715_at	CB345894	-	-	9e+0	At4g31790	diphthine synthase, putative (DPH5)	C.G.	S.X.	Please select
0.18	4e-33	141	1614615_s_at	CF203062.1	-	-	4e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.03	2e-4	46	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	C.G.	S.X.	Please select
0.03	2e-4	46	1617413_at	CD009048	-	-	3e+1	At3g02555	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	1609090_at	CA816766	-	-	4e-1	At1g23570	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	1618403_at	CF517333	-	-	2e-1	At3g62880	ATOEP16-4	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g76680	844001	OPR1	Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	34	Glycine max	GmaAffx.17092.1.S1_at	BE473871	-	-	1e+1	At5g11640	-	C.G.	S.X.	Please select
0.03	6e-2	38	Hordeum vulgare	Contig22602_at	Contig22602	-	-	8e-1	At5g01700	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.16	8e-51	202	Oryza sativa	Os.47976.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	5e-88	325	Populus trichocarpa	Ptp.3156.1.S1_s_at	CV269705	-	-	8e+0	At3g60550	CYCP3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e-10	65	Triticum aestivum	TaAffx.109666.1.S1_at	CA666138	-	-	4e+0	At5g64810	WRKY51	C.G.	S.X.	Please select
0.03	9e-1	34	Zea mays	Zm.8775.2.A1_at	AI065673	-	-	9e-1	At3g23830	GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage