Gene omics information

Query gene ID	1619188_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1619188_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.55	77.3	1615204_at	CF371804	-	-	1e+0	At3g21580	cobalt ion transmembrane transporter	S.X.	H.G.	Please select
0.44	64.1	1610470_at	CF202637.1	-	-	1e-7	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	S.X.	H.G.	Please select
0.29	37.7	1617934_at	BM437104	-	-	1e-76	At2g34590	transketolase family protein	S.X.	H.G.	Please select
0.29	37.7	1607773_at	CD719602	-	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	S.X.	H.G.	Please select
0.25	30.5	1622228_at	CF568837	-	-	4e-68	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
2.9	93.8	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147702	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	31
2.8	93.4	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	1e-137	486	1619648_s_at	CF204375.1	hypothetical protein LOC100257577	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.89	1e-137	486	1608414_x_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.55	1e-119	426	1621489_at	BQ800164	hypothetical protein LOC100257577	-	4e+0	At3g23175	lesion inducing protein-related	C.G.	S.X.	Please select
0.03	6e-1	32	1610339_at	CD006681	-	-	6e+0	At5g63225	-	C.G.	S.X.	Please select
0.03	6e-1	32	1608743_at	CB348761	-	-	2e+0	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.03	6e-1	32	1606535_at	CD006681	-	-	6e+0	At5g63225	-	C.G.	S.X.	Please select
0.04	2e+0	30	1622831_at	CB920273	hypothetical protein LOC100258499	-	4e+0	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	C.G.	S.X.	Please select
0.04	2e+0	30	1622569_at	BQ792969	hypothetical protein LOC100245328	-	1e+0	At5g10710	protein binding	C.G.	S.X.	Please select
0.03	2e+0	30	1620040_at	CD715189	-	-	4e-16	Atcg00900	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At1g48940	841316	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e+1	30	Glycine max	HgAffx.4060.1.A1_at	CK348630	-	-	2e-1	At5g44572	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Hordeum vulgare	HI05C10u_at	HI05C10u	-	-	1e+0	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	C.G.	S.X.	Please select
0.07	4e+0	32	Oryza sativa	Os12g0423100	NM_195975.1	-	-	6e+0	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	32	Populus trichocarpa	PtpAffx.208478.1.S1_at	pmrna16841	hypothetical protein	-	1e+1	At5g14690	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-1	36	Triticum aestivum	Ta.17720.2.S1_at	CA625568	-	-	1e-6	At4g00585	unknown protein	C.G.	S.X.	Please select
0.04	1e+1	28	Zea mays	ZmAffx.1081.1.A1_at	AI948368	spotted leaf protein 11	-	1e+1	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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