Gene omics information

Query gene ID	1619176_at
Gene name	hypothetical protein LOC100262554
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1619176_at	CF519067	hypothetical protein LOC100262554	-	5e-61	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	S.X.	H.G.	Please select
0.47	67.7	1620788_at	CF603169	similar to ferrodoxin NADP oxidoreductase	-	2e-17	At4g05390	ATRFNR1 (ROOT FNR 1)	S.X.	H.G.	Please select
0.33	45.7	1610578_at	BG273711	hypothetical protein LOC100247027	-	1e-13	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	S.X.	H.G.	Please select
0.32	43.1	1618236_at	CF210257	hypothetical protein LOC100260911	-	4e-3	At1g50350	-	S.X.	H.G.	Please select
0.29	37.7	1615136_at	CF206458.1	hypothetical protein LOC100255051	-	1e-68	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	S.X.	H.G.	Please select
0.12	12.1	1607327_at	CA817949	hypothetical protein LOC100267395	-	8e-67	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	99.1	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.8	96.4	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1622881_x_at	CK136938.1	-	-	7e-5	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.02	3e-1	34	1622606_at	CB910226	GDP-D-mannose pyrophosphorylase	-	4e-157	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.03	3e-1	34	1616290_at	CK136938.1	-	-	7e-5	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.03	1e+0	32	1614582_at	BQ799084	hypothetical protein LOC100265011	-	3e-4	At1g08450	CRT3 (CALRETICULIN 3)	C.G.	S.X.	Please select
0.03	1e+0	32	1610817_at	CF513296	-	-	2e+0	At5g11830	-	C.G.	S.X.	Please select
0.03	5e+0	30	1622322_at	CB977640	-	-	6e-12	At4g18465	RNA helicase, putative	C.G.	S.X.	Please select
0.03	5e+0	30	1621383_at	CD718971	-	-	9e-8	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.03	5e+0	30	1621206_at	CD717322	-	-	1e-2	At1g22440	alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.03	5e+0	30	1621156_at	CD799492	-	-	4e-2	At5g14040	mitochondrial phosphate transporter	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	5e-61	234	Arabidopsis thaliana	At1g36730	840582	eukaryotic translation initiation factor 5, putative / eIF-5, putative	F:binding, translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:unknown;OMFBPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	4e-53	208	Glycine max	GmaAffx.75978.3.S1_s_at	CA937876	-	-	2e-35	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please select
0.27	3e-42	171	Hordeum vulgare	Contig2883_s_at	Contig2883	-	-	5e-15	At1g77840	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please select
0.27	7e-62	238	Oryza sativa	Os09g0326900	AK067685.1	-	-	7e-36	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	4e-47	188	Populus trichocarpa	PtpAffx.50347.1.S1_at	CX172783	hypothetical protein	-	2e-21	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	7e-48	190	Triticum aestivum	Ta.3372.1.S1_at	BJ275823	Translation initiation factor eIF5	-	6e-27	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please select
0.26	1e-53	208	Zea mays	Zm.97.1.S1_at	BM073786	Eukaryotic initiation factor-5	-	1e-24	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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