CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619154_at

Gene name hypothetical protein LOC100246237

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 91.0 1619154_at CF212140 hypothetical protein LOC100246237 - 1e-7 At4g25770 unknown protein S.X. H.G.
0.44 64.1 1606735_at CB970224 hypothetical protein LOC100249353 - 4e+0 At3g15420 unknown protein S.X. H.G.
0.40 57.7 1615804_at CF403733 - - 4e-2 At5g65910 BSD domain-containing protein S.X. H.G.
0.38 53.6 1618759_at CB348270 hypothetical protein LOC100256813 - 1e+0 At1g76010 nucleic acid binding S.X. H.G.
0.36 50.7 1620980_s_at CF209157 hypothetical protein LOC100255909 - 7e-6 At1g14685 BPC2 (BASIC PENTACYSTEINE 2) S.X. H.G.
0.31 41.3 1611262_at CD013610 hypothetical protein LOC100244343 - 1e+0 At3g24010 ING1 (INHIBITOR OF GROWTH 1) S.X. H.G.
0.30 39.4 1622077_s_at CF372353 hypothetical protein LOC100249199 - 3e-21 At3g27430 PBB1 S.X. H.G.
0.27 34.0 1619715_at CF207152 hypothetical protein LOC100243011 - 5e-39 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.25 30.5 AFFX-Vvi-actin-3_c7_s_at - actin 1 - 0 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 94.6 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 3e-138 490 1610922_at CF404315 - - 2e-1 At5g47610 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.13 2e-58 224 1622544_a_at CD801877 hypothetical protein LOC100259887 - 9e-12 At5g57630 CIPK21 (CBL-interacting protein kinase 21) C.G. S.X.
0.03 1e-4 46 1611574_at CF511277 hypothetical protein LOC100243229 - 1e-23 At4g30620 unknown protein C.G. S.X.
0.02 5e-1 34 1617383_at CD719640 - - 1e+0 At2g39630 glycosyl transferase family 2 protein C.G. S.X.
0.02 5e-1 34 1613559_at CD719640 hypothetical LOC100252347 - 1e+0 At2g39630 glycosyl transferase family 2 protein C.G. S.X.
0.03 5e-1 34 1608469_at CF519012 hypothetical protein LOC100246886 - 4e+0 At4g23910 unknown protein C.G. S.X.
0.02 2e+0 32 1618494_at CF405291 hypothetical protein LOC100264126 - 7e-5 At1g18010 - C.G. S.X.
0.02 2e+0 32 1616401_at CF213677 hypothetical protein LOC100263582 - 4e-1 At5g07430 pectinesterase family protein C.G. S.X.
0.02 2e+0 32 1615712_s_at CB911214 similar to nascent polypeptide associated complex alpha - 2e-43 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-7 57 Arabidopsis thaliana At4g25770 828682 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;FMPOB - - - C.G. S.X.
0.05 4e-2 40 Glycine max PsAffx.psMC008xD22f_at PsAffx.psMC008xD22f - - 3e+0 At1g78460 SOUL heme-binding family protein C.G. S.X.
0.08 2e-10 65 Hordeum vulgare Contig13141_at Contig13141 - - 1e-5 At4g25770 unknown protein C.G. S.X.
0.08 6e-20 99 Oryza sativa Os.27832.1.A1_s_at - - - 0 C.G. S.X.
0.19 9e-43 174 Populus trichocarpa PtpAffx.111536.1.S1_at CV276523 - - 3e-5 At4g25770 unknown protein C.G. S.X.
0.08 3e-5 50 Triticum aestivum Ta.24140.1.A1_a_at BG907485 - - 2e-4 At4g33800 unknown protein C.G. S.X.
0.13 8e-10 63 Zea mays Zm.9813.1.A1_at BM333784 serine esterase family protein - 2e+0 At5g51180 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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