Gene omics information

Query gene ID	1619140_at
Gene name	hypothetical protein LOC100246049
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	94.8	1619140_at	CF606031	hypothetical protein LOC100246049	-	4e-4	At2g35270	DNA-binding protein-related	S.X.	H.G.	Please select
0.54	75.7	1620931_at	CB915389	hypothetical LOC100243703	-	2e-2	At3g55940	phosphoinositide-specific phospholipase C, putative	S.X.	H.G.	Please select
0.48	68.8	1619038_at	BQ800482	hypothetical protein LOC100259975	-	5e-12	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	S.X.	H.G.	Please select
0.43	61.5	1615915_at	CF518741	hypothetical protein LOC100267889	-	4e+0	At2g24880	self-incompatibility protein-related	S.X.	H.G.	Please select
0.38	53.6	1612860_at	CF210174	hypothetical protein LOC100261292	-	4e-54	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	S.X.	H.G.	Please select
0.36	50.7	1617829_at	CF215141	hypothetical protein LOC100244817	-	9e-2	At5g60800	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.36	50.7	1611842_at	CB969887	hypothetical protein LOC100267889	-	5e-27	At2g25737	unknown protein	S.X.	H.G.	Please select
0.34	46.8	1608970_s_at	CF206450.1	-	-	7e-1	At4g02810	unknown protein	S.X.	H.G.	Please select
0.34	46.8	1614388_at	CF210132	hypothetical protein LOC100241529	-	2e-1	At2g21610	pectinesterase family protein	S.X.	H.G.	Please select
0.31	41.3	1617272_at	CF518232	zinc finger RING-type protein-like	-	1e-3	At3g54780	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.2	99.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.8	99.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.0	99.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.9	99.5	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7	99.0	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6	97.6	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1	96.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8	96.4	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
3.6	96.0	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-25	113	1615346_at	BQ798326	hypothetical protein LOC100246049	-	2e-7	At1g72160	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select
0.04	2e-6	52	1609831_at	BQ794470	hypothetical protein LOC100263800	-	3e-1	At3g63230	unknown protein	C.G.	S.X.	Please select
0.03	7e-6	50	1622195_at	CB969266	hypothetical protein LOC100248937	-	3e-15	At4g07990	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	7e-6	50	1621663_at	CF211908	-	-	5e-1	At4g04650	-	C.G.	S.X.	Please select
0.03	7e-6	50	1621610_at	CF372731	-	-	8e-6	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select
0.04	7e-6	50	1621244_s_at	CD797552	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.04	7e-6	50	1618494_at	CF405291	hypothetical protein LOC100264126	-	7e-5	At1g18010	-	C.G.	S.X.	Please select
0.03	7e-6	50	1614437_at	CF406008	-	-	5e-1	At3g25882	NIMIN-2 (NIM1-INTERACTING 2)	C.G.	S.X.	Please select
0.04	7e-6	50	1614558_at	CF214381	hypothetical protein LOC100252287	-	1e-3	At1g09750	chloroplast nucleoid DNA-binding protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-4	46	Arabidopsis thaliana	At2g35270	818094	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-3	42	Glycine max	GmaAffx.83935.1.S1_s_at	BI788322	-	-	3e-4	At1g30260	-	C.G.	S.X.	Please select
0.06	4e-2	38	Hordeum vulgare	Contig6627_at	Contig6627	-	-	1e-6	At1g77710	-	C.G.	S.X.	Please select
0.03	2e-4	48	Oryza sativa	Os06g0199000	AK106381.1	-	Glycine-rich cell wall structural protein 2precursor	1e-4	At1g54215	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.692.20.S1_s_at	BU883660	hypothetical protein	-	1e+0	At4g20250	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-4	48	Triticum aestivum	Ta.11975.2.S1_a_at	BG906941	-	-	1e+1	At5g55570	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.13491.1.S1_at	CK394796	-	-	1e-2	At2g35640	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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