CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619134_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.0 1619134_at CB971759 - - 2e+0 At5g53720 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.53 75.2 1606676_at CF403737 hypothetical protein LOC100245560 - 9e-2 At1g05060 unknown protein S.X. H.G.
0.38 53.6 1615091_at CD801426 hypothetical protein LOC100242289 - 2e-2 At1g13770 - S.X. H.G.
0.35 48.5 1610423_s_at CB977222 hypothetical protein LOC100250124 - 5e-6 At2g02960 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.31 41.3 1611084_at CA816784 - - 6e+0 At3g26690 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) S.X. H.G.
0.25 30.5 1611171_at CD003897 hypothetical protein LOC100256369 - 6e-13 At3g52570 ATP binding S.X. H.G.
0.13 13.3 1608904_at CK138119.1 similar to F2D10.18 - 6e-9 At1g20696 HMGB3 (HIGH MOBILITY GROUP B 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 97.2 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.7 96.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
3.7 96.2 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.7 96.2 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.6 96.0 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
3.5 95.7 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.1 94.6 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
3.0 94.2 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.8 93.4 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
2.8 93.4 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-79 293 1613262_at CA810370 hypothetical protein LOC100263989 - 2e+0 At1g07350 transformer serine/arginine-rich ribonucleoprotein, putative C.G. S.X.
0.17 3e-79 293 1609399_a_at CA810370 hypothetical protein LOC100263989 - 2e+0 At1g07350 transformer serine/arginine-rich ribonucleoprotein, putative C.G. S.X.
0.04 1e-1 36 1611933_at CB345450 hypothetical protein LOC100266645 - 2e-6 At3g52150 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 5e-1 34 1621105_at CB001875 - - 1e+0 At2g42130 unknown protein C.G. S.X.
0.02 5e-1 34 1617316_at CB001875 - - 1e+0 At2g42130 unknown protein C.G. S.X.
0.03 5e-1 34 1612685_a_at CD798867 hypothetical protein LOC100242160 - 1e+0 At4g16610 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 5e-1 34 1611151_at CF510705 hypothetical protein LOC100249757 - 2e-77 At5g16070 chaperonin, putative C.G. S.X.
0.01 2e+0 32 1620208_at CF213681 hypothetical protein LOC100258803 - 5e-27 At5g15630 IRX6 C.G. S.X.
0.02 2e+0 32 1614959_at BQ799150 hypothetical protein LOC100257499 - 1e-10 At5g47060 senescence-associated protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At5g53720 835453 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA - - - C.G. S.X.
0.12 2e-4 48 Glycine max GmaAffx.20034.1.S1_at CA783194 - - 3e-1 At1g07350 transformer serine/arginine-rich ribonucleoprotein, putative C.G. S.X.
0.04 1e-2 40 Hordeum vulgare Contig8043_at Contig8043 - - 3e+0 At5g51990 CBF4 (C- REPEAT-BINDING FACTOR 4) C.G. S.X.
0.02 2e-1 38 Oryza sativa Os05g0541100 AK107193.1 - IQ calmodulin-binding region domain containingprotein 2e-1 At4g28390 AAC3 (ADP/ATP CARRIER 3) C.G. S.X.
0.04 9e-3 42 Populus trichocarpa PtpAffx.18096.1.A1_at CV261250 - - 1e-6 At1g78800 glycosyl transferase family 1 protein C.G. S.X.
0.05 7e-3 42 Triticum aestivum Ta.6293.2.S1_a_at BJ251369 alternative splicing regulator - 2e+0 At5g56860 GNC (GATA, nitrate-inducible, carbon metabolism-involved) C.G. S.X.
0.06 7e-1 34 Zea mays Zm.2402.1.A1_at CO524786 transformer-2 protein - 9e+0 At3g06490 MYB108 (myb domain protein 108) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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