Gene omics information

Query gene ID	1619131_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1619131_at	CB973000	-	-	1e+0	At4g03070	AOP1	S.X.	H.G.	Please select
0.29	37.7	1609671_at	CF512301	hypothetical protein LOC100258051	-	2e-8	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	S.X.	H.G.	Please select
0.20	22.4	1615535_at	CF209419	hypothetical protein LOC100247307	-	2e-42	At5g61510	NADP-dependent oxidoreductase, putative	S.X.	H.G.	Please select
0.19	20.9	1615684_at	CF604666	hypothetical protein LOC100244706	-	1e-38	At1g67170	unknown protein	S.X.	H.G.	Please select
0.17	18.2	1612655_at	CA810710	similar to Os11g0123400	-	7e-14	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.06	6.8	1619964_at	CF603500	hypothetical protein LOC100255474	-	1e-64	At4g21810	DER2.1 (DERLIN-2.1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.3	99.4	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.7	99.3	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.3	99.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.7	98.5	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
5.7	98.5	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.2	98.2	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.5	97.5	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.3	97.2	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1609250_at	Y18471.1	SINA1p	-	2e-60	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.01	1e+0	32	1618545_a_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1613244_at	CF214317	hypothetical protein LOC100249966	-	2e-5	At2g41040	methyltransferase-related	C.G.	S.X.	Please select
0.01	1e+0	32	1613154_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1608318_at	CD802434	hypothetical LOC100241440	-	1e-3	At2g44580	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	5e+0	30	1621659_at	BQ798789	hypothetical protein LOC100253534	-	5e-52	At1g55500	ECT4	C.G.	S.X.	Please select
0.02	5e+0	30	1621838_at	CD012562	hypothetical protein LOC100244363	-	2e+0	At5g23530	AtCXE18 (Arabidopsis thaliana carboxyesterase 18)	C.G.	S.X.	Please select
0.02	5e+0	30	1620850_at	CB343297	hypothetical protein LOC100241461	-	2e-140	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please select
0.03	5e+0	30	1620780_at	CD719871	-	-	5e+0	At5g41530	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g03070	828100	AOP1	Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Glycine max	Gma.10681.1.A1_at	BM093573	-	-	1e+0	At1g28960	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	HVSMEn0005O13f_x_at	HVSMEn0005O13f	-	-	2e-1	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.03	8e+0	32	Oryza sativa	OsAffx.29651.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.217373.1.S1_at	pmrna32604	hypothetical protein	-	6e+0	At5g14160	F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.25592.1.S1_at	CA697988	-	-	1e+1	At5g59850	40S ribosomal protein S15A (RPS15aF)	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.7058.3.S1_a_at	AY103767.1	hypothetical protein LOC100217200 /// ypt homolog2	-	4e-76	At5g47200	ATRAB1A	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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