CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619122_s_at

Gene name hypothetical protein LOC100244610

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1619122_s_at CF515522 hypothetical protein LOC100244610 - 3e-26 At5g38470 DNA repair protein RAD23, putative S.X. H.G.
0.67 87.9 1611974_at CF208396 hypothetical protein LOC100258926 - 9e-27 At2g15430 NRPB3 S.X. H.G.
0.67 87.9 1615411_s_at BQ799375 hypothetical protein LOC100266324 - 3e-4 At1g43130 LCV2 (LIKE COV 2) S.X. H.G.
0.67 87.9 1609942_at CF210968 hypothetical protein LOC100262467 - 5e+0 At5g67580 TRB2 S.X. H.G.
0.61 83.2 1613621_s_at CD721086 hypothetical protein LOC100246359 - 3e-1 At5g58412 - S.X. H.G.
0.56 79.4 1608155_at CF210980 hypothetical protein LOC100252195 - 1e-31 At4g34460 AGB1 (GTP BINDING PROTEIN BETA 1) S.X. H.G.
0.53 75.2 1614120_at CB349861 - - 4e-3 At5g40550 unknown protein S.X. H.G.
0.48 68.8 1613208_at CF209522 hypothetical protein LOC100267894 - 8e-38 At1g16610 SR45 S.X. H.G.
0.48 68.8 1610066_at BQ798633 hypothetical protein LOC100265970 - 9e-2 At3g01700 AGP11 S.X. H.G.
0.46 66.5 1606807_at BQ794559 hypothetical protein LOC100264697 - 7e-21 At5g11710 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 96.4 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.90 0 1047 1613295_at CK136933.1 - - 1e-28 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
0.30 2e-64 244 1607998_at BQ793788 hypothetical protein LOC100245820 - 4e-24 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) C.G. S.X.
0.03 4e-4 44 1622027_at CA814069 hypothetical protein LOC100246837 - 6e-7 At3g47160 protein binding / zinc ion binding C.G. S.X.
0.03 3e-2 38 1617721_at CF568847 - - 1e-76 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) C.G. S.X.
0.02 1e-1 36 1614507_at CF373139 hypothetical protein LOC100250082 - 5e-1 At5g12300 C2 domain-containing protein C.G. S.X.
0.02 4e-1 34 1615071_at CF512279 - - 6e-13 At1g16810 unknown protein C.G. S.X.
0.02 4e-1 34 1614745_at CA818458 hypothetical protein LOC100252143 - 2e-8 At2g24090 ribosomal protein L35 family protein C.G. S.X.
0.03 4e-1 34 1614154_at CF568802 - - 7e-8 At1g72440 EDA25 (embryo sac development arrest 25) C.G. S.X.
0.01 4e-1 34 1614048_at CF514124 hypothetical protein LOC100267928 - 1e-45 At3g12860 nucleolar protein Nop56, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-26 119 Arabidopsis thaliana At5g38470 833835 DNA repair protein RAD23, putative F:damaged DNA binding;P:response to cold, nucleotide-excision repair;C:nucleus;MPOFBVA - - - C.G. S.X.
0.38 9e-18 91 Glycine max GmaAffx.93057.1.S1_at CF808782 - - 2e-20 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
0.08 2e-4 46 Hordeum vulgare Contig25535_at Contig25535 - - 1e+0 At3g56250 unknown protein C.G. S.X.
0.07 1e-2 42 Oryza sativa Os09g0407200 U63530.1 - OsRAD23 1e-5 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
0.19 1e-41 171 Populus trichocarpa Ptp.3859.1.S1_a_at DN499341 hypothetical protein - 1e-22 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) C.G. S.X.
0.07 2e-6 54 Triticum aestivum TaAffx.113265.1.S1_at CA616833 - - 3e-4 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
0.04 6e-7 54 Zea mays Zm.3845.1.A1_at AI711969 hypothetical protein LOC100274222 - 2e-7 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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