Gene omics information

Query gene ID	1619117_s_at
Gene name	TFL1A protein
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1619117_s_at	BQ106731	TFL1A protein	-	2e-14	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	S.X.	H.G.	Please select
0.80	93.6	1611801_at	CF210937	hypothetical protein LOC100249426	-	5e+0	At5g02840	LCL1 (LHY/CCA1-like 1)	S.X.	H.G.	Please select
0.67	87.9	1615242_at	CF372258	-	-	2e-1	At1g20780	SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1)	S.X.	H.G.	Please select
0.61	83.2	1611663_s_at	AF378127.1	TFL1A protein	-	3e-3	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	S.X.	H.G.	Please select
0.57	79.8	1611886_at	CF517937	hypothetical protein LOC100256611	-	6e+0	At5g65220	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.19	20.9	1611025_at	CF403139	hypothetical protein LOC100243600	-	4e-1	At3g21560	UGT84A2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.5	100.0	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
15.1	99.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
14.7	99.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
12.8	99.8	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
10.3	99.6	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
9.8	99.6	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
9.2	99.5	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
9.0	99.5	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.7	99.3	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.8	99.0	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	847	1615284_at	BQ106731	TFL1	-	2e-14	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please select
0.48	7e-110	395	1611663_s_at	AF378127.1	TFL1A protein	-	3e-3	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please select
0.03	3e-1	34	1622217_at	CB977220	hypothetical protein LOC100240920	-	2e-21	At4g21320	HSA32 (HEAT-STRESS-ASSOCIATED 32)	C.G.	S.X.	Please select
0.02	3e-1	34	1613557_at	BM436858	-	-	4e-66	At4g37640	ACA2 (CALCIUM ATPASE 2)	C.G.	S.X.	Please select
0.02	3e-1	34	1609778_at	BM436858	hypothetical protein LOC100262693	-	4e-66	At4g37640	ACA2 (CALCIUM ATPASE 2)	C.G.	S.X.	Please select
0.03	1e+0	32	1608667_at	CF405681	hypothetical protein LOC100243274	-	1e+0	At5g53310	myosin heavy chain-related	C.G.	S.X.	Please select
0.03	4e+0	30	1619473_at	CF415678	-	-	2e-13	At1g06515	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	30	1619222_at	CF215786	-	-	4e-1	At5g39540	-	C.G.	S.X.	Please select
0.04	4e+0	30	1615546_at	CF210153	-	-	4e+0	At4g24140	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-14	79	Arabidopsis thaliana	At2g27550	817302	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-2	40	Glycine max	GmaAffx.11049.1.S1_at	BU545140	brother of FT and TFL1 protein	-	5e-3	At5g03840	TFL1 (TERMINAL FLOWER 1)	C.G.	S.X.	Please select
0.15	8e-9	59	Hordeum vulgare	Contig15332_at	Contig15332	-	-	6e-12	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please select
0.10	2e-6	54	Oryza sativa	Os05g0518000	9633.m04121	-	-	2e-1	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.52	5e-37	155	Populus trichocarpa	PtpAffx.35119.1.S1_at	AB181239.1	hypothetical protein	-	2e-20	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	3e-10	65	Triticum aestivum	TaAffx.36760.1.S1_at	BJ315664	-	-	5e-12	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.997.1.A1_at	CF059773	hypothetical protein LOC100275923	-	1e+0	At2g17040	anac036 (Arabidopsis NAC domain containing protein 36)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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