CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619096_at

Gene name hypothetical protein LOC100262646

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 81.9 1619096_at CB969616 hypothetical protein LOC100262646 - 1e-7 At4g24270 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.67 87.9 1620256_at AF021808.1 sucrose transporter-like - 2e-29 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) S.X. H.G.
0.50 72.7 1619598_at BQ792469 hypothetical protein LOC100249152 - 1e+0 At4g03170 DNA binding S.X. H.G.
0.32 43.1 1609387_at CB978426 similar to FIP2 (FH protein interacting protein 2); voltage-gated potassium channel - 4e-48 At5g55000 FIP2 S.X. H.G.
0.20 22.4 1610321_s_at CB980394 hypothetical protein LOC100251531 - 9e-55 At1g64230 ubiquitin-conjugating enzyme, putative S.X. H.G.
0.17 18.2 1615639_a_at BQ795365 hypothetical protein LOC100266227 - 2e-14 At2g44060 late embryogenesis abundant family protein / LEA family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 97.6 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.0 96.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.8 96.4 GSM287890 Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 38 1613511_at BQ796246 hypothetical protein LOC100251492 - 4e-1 At2g45630 oxidoreductase family protein C.G. S.X.
0.03 1e-1 36 1607436_at CF568907 - - 5e-24 At3g60820 PBF1 C.G. S.X.
0.01 5e-1 34 1619145_s_at CB969125 hypothetical protein LOC100250496 - 6e-36 At2g27050 EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1) C.G. S.X.
0.02 2e+0 32 1621712_at CF404145 - - 2e-1 At1g58160 jacalin lectin family protein C.G. S.X.
0.02 2e+0 32 1617048_at CF206608.1 - - 1e-53 At4g01850 SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) C.G. S.X.
0.02 2e+0 32 1616228_at CD717999 - - 2e+0 At1g19086 unknown protein C.G. S.X.
0.02 2e+0 32 1616217_at CB003366 - - 5e+0 At4g13830 J20 (DNAJ-LIKE 20) C.G. S.X.
0.02 2e+0 32 1612953_at CF606754 hypothetical LOC100254354 - 2e+0 At2g20450 60S ribosomal protein L14 (RPL14A) C.G. S.X.
0.02 2e+0 32 1612410_at CB003366 - - 5e+0 At4g13830 J20 (DNAJ-LIKE 20) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-7 57 Arabidopsis thaliana At4g24270 828529 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:intracellular;MFOPB - - - C.G. S.X.
0.07 4e-2 40 Glycine max GmaAffx.92080.1.S1_s_at CF807805 - - 1e+0 At2g41420 proline-rich family protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare EBro02_SQ005_B08_s_at EBro02_SQ005_B08 - - 4e+0 At5g58260 - C.G. S.X.
0.03 9e-1 36 Oryza sativa Os.20233.1.S1_at - - - 0 C.G. S.X.
0.19 7e-10 65 Populus trichocarpa PtpAffx.36093.1.S1_at CV251081 hypothetical protein - 4e-20 At4g24270 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.31521.1.S1_at CA614198 - - 3e+0 At2g05510 glycine-rich protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.4428.1.A1_at AI714801 - - 8e-1 At5g02210 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage