Gene omics information

Query gene ID	1619067_at
Gene name	hypothetical protein LOC100259429
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	79.4	1619067_at	CB339465	hypothetical protein LOC100259429	-	8e-27	At1g70760	CRR23 ((chlororespiratory reduction 23)	S.X.	H.G.	Please select
0.78	92.6	1612275_at	CF512634	hypothetical protein LOC100253288	-	4e-13	At5g01920	STN8	S.X.	H.G.	Please select
0.76	91.5	1612480_at	CB971929	hypothetical protein LOC100243071	-	1e-1	At1g14150	oxygen evolving enhancer 3 (PsbQ) family protein	S.X.	H.G.	Please select
0.73	90.8	1618284_at	CF516397	hypothetical protein LOC100260169	-	8e-39	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	S.X.	H.G.	Please select
0.70	88.6	1619879_s_at	CB340231	hypothetical protein LOC100259229	-	4e-32	At1g32470	glycine cleavage system H protein, mitochondrial, putative	S.X.	H.G.	Please select
0.60	81.9	1609923_at	CB341249	hypothetical protein LOC100244701	-	2e-27	At3g14415	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.54	75.7	1613167_s_at	CA817855	hypothetical protein LOC100260169	-	9e-18	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	S.X.	H.G.	Please select
0.52	73.9	1617901_s_at	CA817757	hypothetical protein LOC100259229	-	6e-18	At1g32470	glycine cleavage system H protein, mitochondrial, putative	S.X.	H.G.	Please select
0.50	72.7	1611324_at	CB348704	hypothetical protein LOC100263597	-	4e-7	At1g14345	oxidoreductase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	99.1	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
6.3	98.8	GSM147677	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	6
6.1	98.7	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
6.0	98.7	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
5.8	98.6	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
5.6	98.4	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
5.6	98.4	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
5.4	98.3	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
5.2	98.2	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
5.1	98.1	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	1616358_at	BQ798612	MLO14 protein	-	1e+0	At5g27170	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1611601_at	CB977009	hypothetical protein LOC100245304	-	2e+0	At3g62820	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1606780_at	CF403341	-	-	1e-16	At5g26780	SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	2e+0	32	1622644_at	CB007566	hypothetical protein LOC100250337	-	6e-172	At2g42520	DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1621285_at	CB347466	hypothetical protein LOC100251632	-	3e-24	At4g01310	ribosomal protein L5 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1617304_at	CF404560	hypothetical protein LOC100245676	-	1e+0	At3g11580	DNA-binding protein, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1615816_s_at	CF514066	hypothetical protein LOC100243084	-	2e-6	At1g01360	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1609620_at	CB979452	-	-	7e+0	At5g51845	-	C.G.	S.X.	Please select
0.02	2e+0	32	1608530_at	CB971070	hypothetical protein LOC100265997	-	2e-4	At5g64460	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	8e-27	121	Arabidopsis thaliana	At1g70760	843413	CRR23 ((chlororespiratory reduction 23)	a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	8e-28	125	Glycine max	Gma.12514.1.S1_at	CD396648	-	-	1e-13	At1g70760	CRR23 ((chlororespiratory reduction 23)	C.G.	S.X.	Please select
0.09	1e-5	50	Hordeum vulgare	Contig5950_s_at	Contig5950	-	-	4e-4	At1g70760	CRR23 ((chlororespiratory reduction 23)	C.G.	S.X.	Please select
0.06	8e-7	56	Oryza sativa	Os05g0348100	CB645980	-	Hypothetical protein	5e-8	At1g70760	CRR23 ((chlororespiratory reduction 23)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	Ptp.6035.1.S1_at	CK093865	hypothetical protein	-	2e+0	At5g14110	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.5529.1.S1_at	CA707923	-	-	3e+0	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.10	4e-5	48	Zea mays	Zm.8680.1.A1_at	BM075162	hypothetical protein LOC100277231	-	1e-3	At1g70760	CRR23 ((chlororespiratory reduction 23)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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