Gene omics information

Query gene ID	1619060_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1619060_at	CA817769	-	-	1e+0	At3g57340	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.22	25.6	1622350_at	CF210825	-	-	7e-6	At5g46340	O-acetyltransferase-related	S.X.	H.G.	Please select
0.18	19.4	1610494_at	CD012804	-	-	8e-40	At1g05230	HDG2 (HOMEODOMAIN GLABROUS 2)	S.X.	H.G.	Please select
0.07	7.8	1622116_at	BQ793439	hypothetical protein LOC100264025	-	4e-2	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	S.X.	H.G.	Please select
0.03	4.2	1618544_at	CB976993	similar to pumilio domain-containing protein PPD1	-	4e-20	At4g25880	APUM6 (Arabidopsis Pumilio 6)	S.X.	H.G.	Please select
0.03	4.2	1611171_at	CD003897	hypothetical protein LOC100256369	-	6e-13	At3g52570	ATP binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	99.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
7.4	99.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.6	98.4	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
5.6	98.4	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
5.6	98.4	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.4	98.3	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
4.6	97.6	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
4.1	96.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-3	38	1614670_at	BQ796652	hypothetical protein LOC100245367	-	7e-7	At3g47360	AtHSD3 (hydroxysteroid dehydrogenase 3)	C.G.	S.X.	Please select
0.02	1e-1	34	1620564_at	CA812876	-	-	1e-21	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.04	1e-1	34	1612218_at	CF205110.1	-	-	5e+0	Atcg00750	-	C.G.	S.X.	Please select
0.02	4e-1	32	1622173_at	CD719685	-	-	3e-6	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	C.G.	S.X.	Please select
0.02	4e-1	32	1618391_at	CD719685	-	-	3e-6	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	C.G.	S.X.	Please select
0.03	4e-1	32	1610631_at	CF204373.1	-	-	1e+0	At3g24210	ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	4e-1	32	1608192_at	CB982511	hypothetical protein LOC100259233	-	2e-19	At5g13180	ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)	C.G.	S.X.	Please select
0.05	2e+0	30	1618921_at	CK138176.1	-	-	5e-2	At2g04480	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	30	1618231_at	AF141642.1	-	-	8e-50	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	Arabidopsis thaliana	At3g57340	824901	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:plasma membrane;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e+0	32	Glycine max	GmaAffx.38539.1.A1_s_at	CD401728	-	-	1e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.05	1e+1	28	Hordeum vulgare	EBpi01_SQ001_A05_s_at	EBpi01_SQ001_A05	-	-	3e+0	At2g31005	-	C.G.	S.X.	Please select
0.07	3e+0	32	Oryza sativa	Os01g0792400	AK062797.1	-	Photosystem I assembly protein ycf4	2e-53	Atcg00520	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	36	Populus trichocarpa	PtpAffx.111296.1.S1_s_at	CX173639	hypothetical protein	-	1e-40	At4g36750	quinone reductase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e+0	30	Triticum aestivum	TaAffx.59051.1.S1_x_at	CA609087	-	-	8e-1	At4g31770	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select
0.04	3e+0	30	Zea mays	Zm.7644.1.A1_at	CF632662	complex 1 protein containing protein	-	4e-1	At4g12080	DNA-binding family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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