Gene omics information

Query gene ID	1619028_at
Gene name	hypothetical protein LOC100248919
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1619028_at	CF205704.1	hypothetical protein LOC100248919	-	3e-26	At3g60620	phosphatidate cytidylyltransferase family protein	S.X.	H.G.	Please select
0.83	94.6	1613951_at	CF404624	hypothetical protein LOC100242676	-	1e-13	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	S.X.	H.G.	Please select
0.67	87.9	1607166_at	CF517014	hypothetical protein LOC100254901	-	2e+1	Atmg00730	-	S.X.	H.G.	Please select
0.67	87.9	1608770_at	CF211789	-	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	S.X.	H.G.	Please select
0.50	72.7	1614839_s_at	CB978167	hypothetical protein LOC100251023	-	3e-10	At1g04290	thioesterase family protein	S.X.	H.G.	Please select
0.23	27.5	1608447_at	CB913704	hypothetical protein LOC100244219	-	3e-1	At3g44620	protein tyrosine phosphatase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	95.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.0	94.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.7	93.0	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.4	91.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.2	89.9	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.1	89.1	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
2.1	89.1	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	825	1613457_s_at	CF211789	hypothetical protein LOC100248919	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	C.G.	S.X.	Please select
0.69	0	825	1608770_at	CF211789	-	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	C.G.	S.X.	Please select
0.03	1e-1	36	1618961_at	CD801645	-	-	1e+0	At2g35612	-	C.G.	S.X.	Please select
0.02	2e+0	32	1618429_at	CB980302	hypothetical protein LOC100267238	-	5e-4	At2g40280	dehydration-responsive family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1612642_at	CB970994	hypothetical protein LOC100244706	-	5e+0	At3g43570	GDSL-motif lipase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1612342_at	CF207490	-	-	4e+0	At5g15802	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1612008_at	CF604996	hypothetical protein LOC100243222	-	1e+0	At4g08790	nitrilase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1609902_at	CF512480	hypothetical protein LOC100257135	-	3e-16	At3g03960	chaperonin, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1609231_at	BQ795340	-	-	2e-11	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-26	119	Arabidopsis thaliana	At3g60620	825233	phosphatidate cytidylyltransferase family protein	F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:chloroplast, membrane, chloroplast envelope;BOMFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	3e-5	50	Glycine max	GmaAffx.42311.1.S1_at	BQ740270	-	-	6e-24	At2g45150	phosphatidate cytidylyltransferase family protein	C.G.	S.X.	Please select
0.08	4e-8	57	Hordeum vulgare	Contig13804_at	Contig13804	-	-	2e-13	At2g45150	phosphatidate cytidylyltransferase family protein	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.21541.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	Ptp.7105.1.S1_s_at	DN503246	hypothetical protein	-	5e-3	At1g61740	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-1	36	Triticum aestivum	Ta.6267.1.S1_at	BJ300973	-	-	4e+0	At4g19880	-	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.433.1.A1_at	AI676948	-	-	2e-1	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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