CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619027_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1619027_at CA818485 - - 7e-2 At4g39250 ATRL1 (ARABIDOPSIS RAD-LIKE 1) S.X. H.G.
0.50 72.7 1606889_at CA817233 - - 4e+0 At1g69210 unknown protein S.X. H.G.
0.38 53.6 1612448_at CA817520 hypothetical protein LOC100256681 - 1e-10 At2g17040 anac036 (Arabidopsis NAC domain containing protein 36) S.X. H.G.
0.36 50.7 1608318_at CD802434 hypothetical LOC100241440 - 1e-3 At2g44580 protein binding / zinc ion binding S.X. H.G.
0.18 19.4 1618088_at CF215074 hypothetical protein LOC100250661 /// hypothetical protein LOC100265273 - 2e+0 At1g61105 disease resistance protein-related S.X. H.G.
0.13 13.3 1610923_a_at CD710821 isoflavone reductase-like protein 5 - 9e-31 At4g39230 isoflavone reductase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.6 99.9 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
10.9 99.7 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
10.6 99.7 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
9.9 99.6 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
8.4 99.4 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
8.0 99.3 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
7.9 99.3 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
7.4 99.2 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
7.2 99.1 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
7.2 99.1 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 34 1620899_at CF203369.1 hypothetical protein LOC100257267 - 9e-2 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) C.G. S.X.
0.03 3e-1 34 1618961_at CD801645 - - 1e+0 At2g35612 - C.G. S.X.
0.02 3e-1 34 1611372_at CD711835 - - 9e-61 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.02 3e-1 34 1607396_s_at CD711835 hypothetical protein LOC100266035 - 9e-61 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.02 3e-1 34 1606516_s_at CF511684 hypothetical protein LOC100257267 - 7e-3 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) C.G. S.X.
0.03 1e+0 32 1622880_at CF404749 - - 2e-1 At3g15020 malate dehydrogenase (NAD), mitochondrial, putative C.G. S.X.
0.02 1e+0 32 1614117_at CF200679.1 - - 4e-4 At1g61890 MATE efflux family protein C.G. S.X.
0.03 5e+0 30 1622701_at CF415421 hypothetical protein LOC100264565 - 7e-5 At4g24220 VEP1 (VEIN PATTERNING 1) C.G. S.X.
0.02 5e+0 30 1621917_at CF208474 hypothetical protein LOC100244091 - 1e-20 At3g03420 Ku70-binding family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-2 38 Arabidopsis thaliana At4g39250 830081 ATRL1 (ARABIDOPSIS RAD-LIKE 1) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMO - - - C.G. S.X.
0.06 4e-4 46 Glycine max Gma.4784.1.A1_at AW310484 - - 8e-12 At4g23270 protein kinase family protein C.G. S.X.
0.05 8e-3 40 Hordeum vulgare HVSMEm0018O23r2_at HVSMEm0018O23r2 - - 1e-3 At4g23150 protein kinase family protein C.G. S.X.
0.02 2e+0 34 Oryza sativa Os04g0687100 AK073929.1 - Soluble inorganic pyrophosphatase (EC 3.6.1.1)(Pyrophosphate phospho- hydrolase) (PPase) 1e-29 At4g01480 AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.220611.1.S1_at pmrna37016 hypothetical protein - 2e+1 At5g08180 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein C.G. S.X.
0.06 1e+0 34 Triticum aestivum Ta.4696.1.S1_at BJ275186 - - 6e-6 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.03 7e+0 30 Zea mays Zm.3169.3.S1_x_at CF628824 60S ribosomal protein L33-B - 2e-9 At1g74270 60S ribosomal protein L35a (RPL35aC) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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