CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619018_at

Gene name hypothetical protein LOC100254250

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1619018_at CF414864 hypothetical protein LOC100254250 - 6e-2 At5g54850 unknown protein S.X. H.G.
0.55 77.3 1612328_at CF212371 hypothetical protein LOC100247770 - 6e+0 At5g07510 GRP14 S.X. H.G.
0.51 73.2 1613373_at BM437091 hypothetical protein LOC100245626 - 5e-7 At3g25500 AFH1 (FORMIN HOMOLOGY 1) S.X. H.G.
0.49 69.3 1609364_at CD013445 similar to thioredoxin-related protein - 8e-6 At3g56580 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.49 69.3 1618126_at CF213298 hypothetical protein LOC100261549 - 3e-8 At1g76660 - S.X. H.G.
0.47 67.7 1608586_at CF514688 hypothetical protein LOC100241814 - 4e-18 At4g21960 PRXR1 S.X. H.G.
0.44 64.1 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) S.X. H.G.
0.44 64.1 1622665_s_at CF215188 hypothetical protein LOC100246461 - 5e+0 At5g19257 unknown protein S.X. H.G.
0.43 61.5 1609174_at CF403273 hypothetical protein LOC100252716 - 5e-48 At3g25500 AFH1 (FORMIN HOMOLOGY 1) S.X. H.G.
0.43 61.5 1611714_at BQ794807 hypothetical protein LOC100264866 - 2e-61 At2g42500 PP2A-4 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 98.4 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 34 1614146_at CF208833 - - 4e+0 At3g06690 FAD binding / acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors C.G. S.X.
0.04 1e+0 32 1617828_at CD800381 - - 9e-1 At4g36510 unknown protein C.G. S.X.
0.02 1e+0 32 1617349_at CF203026.1 hypothetical protein LOC100264419 - 4e-1 Atmg01020 - C.G. S.X.
0.03 4e+0 30 1622660_at CF516479 hypothetical protein LOC100266599 - 2e-68 At4g04770 ATABC1 (ATP BINDING CASSETTE PROTEIN 1) C.G. S.X.
0.02 4e+0 30 1622148_at CB003815 hypothetical protein LOC100248028 - 4e-175 At5g36790 phosphoglycolate phosphatase, putative C.G. S.X.
0.02 4e+0 30 1620870_s_at BQ794210 hypothetical protein LOC100251175 - 3e-18 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) C.G. S.X.
0.04 4e+0 30 1620857_at CF207003.1 - - 4e-2 At1g13635 methyladenine glycosylase family protein C.G. S.X.
0.02 4e+0 30 1619638_at CF606242 hypothetical protein LOC100243143 - 1e-1 At3g19900 unknown protein C.G. S.X.
0.02 4e+0 30 1619282_at CB971606 hypothetical protein LOC100252267 - 5e-75 At4g21710 NRPB2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-2 38 Arabidopsis thaliana At5g54850 835575 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPM - - - C.G. S.X.
0.22 6e-21 101 Glycine max Gma.14011.2.A1_at CD413458 - - 8e-7 At1g26090 unknown protein C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig1138_at Contig1138 - - 2e-14 At1g07790 HTB1 C.G. S.X.
0.04 1e-1 38 Oryza sativa Os10g0552700 AK063090.1 - Tumor-related protein (Fragment) 2e+1 At5g67600 unknown protein C.G. S.X.
0.27 5e-43 174 Populus trichocarpa PtpAffx.49569.1.A1_at CV279998 hypothetical protein - 2e-5 At1g26090 unknown protein C.G. S.X.
0.06 9e-1 34 Triticum aestivum TaAffx.112404.2.S1_at CA618399 - - 3e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.03 3e-2 38 Zea mays Zm.2331.1.S1_x_at AY106132.1 protein induced upon tuberization - 2e+0 At3g44718 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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