Gene omics information

Query gene ID	1619013_at
Gene name	hypothetical protein LOC100242671
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	67.7	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	S.X.	H.G.	Please select
0.67	87.9	1606735_at	CB970224	hypothetical protein LOC100249353	-	4e+0	At3g15420	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1622731_at	CF403287	hypothetical protein LOC100257054	-	8e-12	At3g55070	-	S.X.	H.G.	Please select
0.60	81.9	1619715_at	CF207152	hypothetical protein LOC100243011	-	5e-39	At1g30470	SIT4 phosphatase-associated family protein	S.X.	H.G.	Please select
0.57	79.8	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	S.X.	H.G.	Please select
0.39	54.9	1613731_at	CF513972	hypothetical protein LOC100248748	-	2e-5	At5g63840	RSW3 (RADIAL SWELLING 3)	S.X.	H.G.	Please select
0.36	50.7	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.1	94.6	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.8	93.4	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.2	89.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	34	1619333_at	CF201109.1	hypothetical protein LOC100245238	-	3e-51	At1g03910	-	C.G.	S.X.	Please select
0.02	4e-1	34	1608041_at	CF405027	hypothetical protein LOC100256941	-	7e-96	At4g30600	signal recognition particle receptor alpha subunit family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1615261_at	CF213090	hypothetical protein LOC100254421	-	2e-8	At3g54110	PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1614911_at	CB973526	hypothetical protein LOC100244484	-	2e+0	At3g29300	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1612889_s_at	CF512929	-	-	7e-1	At1g73490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1607834_at	CF216002	hypothetical protein LOC100241190	-	1e+0	At4g34780	auxin-responsive family protein	C.G.	S.X.	Please select
0.02	7e+0	30	1622364_at	CF606509	-	-	2e+0	At5g62750	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	1621456_at	CF403507	hypothetical protein LOC100252628	-	5e-2	At2g36530	LOS2	C.G.	S.X.	Please select
0.03	7e+0	30	1621623_at	CF208039	hypothetical protein LOC100253665	-	2e-2	At3g25011	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-32	139	Arabidopsis thaliana	At1g03260	839546	-	F:unknown;P:unknown;C:endomembrane system;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	9e-46	184	Glycine max	Gma.2518.3.S1_at	BG156372	-	-	1e-20	At1g03260	-	C.G.	S.X.	Please select
0.20	2e-16	85	Hordeum vulgare	Contig10087_at	Contig10087	-	-	1e-10	At1g03260	-	C.G.	S.X.	Please select
0.07	5e-8	59	Oryza sativa	Os07g0655900	AK069576.1	-	Conserved hypothetical protein	2e-4	At1g03260	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	1e-94	347	Populus trichocarpa	PtpAffx.34909.1.S1_at	CX180573	hypothetical protein	-	3e-12	At1g03260	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	4e-10	65	Triticum aestivum	Ta.7219.2.S1_at	CK208187	-	-	1e-11	At1g03260	-	C.G.	S.X.	Please select
0.17	1e-17	89	Zea mays	Zm.3094.1.S1_at	CK986065	-	-	7e-16	At1g03260	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage