Gene omics information

Query gene ID	1618937_at
Gene name	hypothetical protein LOC100255532
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1618937_at	CB920899	hypothetical protein LOC100255532	-	2e-14	At4g29960	unknown protein	S.X.	H.G.	Please select
0.80	93.6	1611869_at	CF609640	hypothetical protein LOC100254356	-	5e-9	At2g24830	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein	S.X.	H.G.	Please select
0.59	80.6	1614829_at	CF518749	hypothetical protein LOC100265775	-	3e-32	At4g35360	pantothenate kinase family protein	S.X.	H.G.	Please select
0.57	79.8	1613190_at	CF604163	hypothetical protein LOC100244118	-	2e-2	At1g16560	Per1-like family protein	S.X.	H.G.	Please select
0.46	66.5	1613321_at	CF516415	hypothetical protein LOC100244395	-	5e-49	At5g55070	2-oxoacid dehydrogenase family protein	S.X.	H.G.	Please select
0.35	48.5	1611784_at	CB971421	hypothetical protein LOC100256712	-	2e-37	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	1615020_at	CF215189	hypothetical protein LOC100255532	-	1e+0	At3g11250	60S acidic ribosomal protein P0 (RPP0C)	C.G.	S.X.	Please select
0.03	4e-1	34	1618908_at	CB834387	-	-	4e-4	At3g17090	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.03	4e-1	34	1615316_at	BG273906	hypothetical protein LOC100258500	-	5e+0	At2g01740	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	1615087_at	CB834387	-	-	4e-4	At3g17090	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.03	4e-1	34	1614311_at	CF516097	hypothetical protein LOC100264243	-	2e-6	At1g15780	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1621815_at	CF213959	hypothetical protein LOC100261110	-	1e+0	At1g12630	DNA binding / transcription activator/ transcription factor	C.G.	S.X.	Please select
0.03	2e+0	32	1621568_at	CF415414	hypothetical protein LOC100252433	-	1e+0	At2g07721	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1621124_at	CF210451	-	-	4e-6	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	C.G.	S.X.	Please select
0.02	2e+0	32	1620678_at	CB837115	-	-	4e-13	At4g01690	PPOX	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-14	79	Arabidopsis thaliana	At4g29960	829119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-4	48	Glycine max	GmaAffx.73506.1.S1_x_at	CA799898	-	-	2e-1	At5g20920	EIF2 BETA	C.G.	S.X.	Please select
0.05	7e-7	54	Hordeum vulgare	Contig7159_at	Contig7159	-	-	2e+0	At3g17090	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.05	2e-4	48	Oryza sativa	Os.8738.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.37	1e-25	117	Populus trichocarpa	PtpAffx.149393.1.S1_at	CN524402	hypothetical protein	-	5e-22	At4g29960	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-6	54	Triticum aestivum	Ta.9713.1.S1_at	CD891562	-	-	3e+0	At3g17090	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.04	6e-1	34	Zea mays	ZmAffx.1127.1.S1_at	AW324638	-	-	2e-1	At1g27380	RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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