Gene omics information

Query gene ID	1618930_at
Gene name	hypothetical protein LOC100254102
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	95.5	1618930_at	CF206622.1	hypothetical protein LOC100254102	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	S.X.	H.G.	Please select
0.59	80.6	1610556_at	CF415554	hypothetical protein LOC100250209	-	4e+0	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.39	54.9	1619715_at	CF207152	hypothetical protein LOC100243011	-	5e-39	At1g30470	SIT4 phosphatase-associated family protein	S.X.	H.G.	Please select
0.37	51.7	1618996_at	CD801234	hypothetical protein LOC100241601	-	8e-17	At5g41560	-	S.X.	H.G.	Please select
0.36	50.7	1609035_at	BQ796729	hypothetical protein LOC100251284	-	2e-12	At2g40830	RHC1A	S.X.	H.G.	Please select
0.36	50.7	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	S.X.	H.G.	Please select
0.33	45.7	1622789_x_at	CF206467.1	-	-	4e+1	At5g53590	auxin-responsive family protein	S.X.	H.G.	Please select
0.30	39.4	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	S.X.	H.G.	Please select
0.29	37.7	1608302_at	BQ792683	hypothetical protein LOC100253708	-	4e-3	At4g26750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.27	34.0	1617628_at	CF209591	hypothetical protein LOC100253844	-	7e-9	At1g06720	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	8e-114	408	1616895_at	CB342955	-	-	7e-3	At1g69180	CRC (CRABS CLAW)	C.G.	S.X.	Please select
0.02	5e-1	34	1617465_at	CF519034	hypothetical protein LOC100257586	-	1e-1	At1g44770	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622493_at	CF208434	hypothetical protein LOC100257695	-	9e-11	At3g18000	XPL1 (XIPOTL 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1621871_at	CF204990.1	-	-	2e-18	At2g34630	geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1617251_at	BQ798174	hypothetical protein LOC100245662	-	1e+0	At5g66170	-	C.G.	S.X.	Please select
0.03	2e+0	32	1616359_at	CB339381	-	-	1e+0	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1613918_at	CB345600	hypothetical protein LOC100252364	-	4e-6	At1g01630	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	C.G.	S.X.	Please select
0.02	7e+0	30	1622370_s_at	CD715953	hypothetical protein LOC100241279	-	5e+0	At5g07572	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	1622379_at	CF604690	hypothetical protein LOC100256634	-	1e+0	At4g37685	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g24660	828568	ATHB22 (HOMEOBOX PROTEIN 22)	F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.3745.1.A1_s_at	BE824211	-	-	1e-2	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig21734_at	Contig21734	-	-	8e-1	At3g44550	FAR5 (FATTY ACID REDUCTASE 5)	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os02g0689700	AK072634.1	-	Ribosomal protein L18P/L5E family protein	3e-5	At3g20230	50S ribosomal protein L18 family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.95900.1.A1_at	CV262026	hypothetical protein	-	3e-1	At3g48740	nodulin MtN3 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.9944.1.S1_at	BT008934.1	-	-	1e+1	At5g12236	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.3881.1.A1_at	AY105254.1	PCO115023 protein	-	1e+0	At2g22940	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage